Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01195 ATGGGAAGAACACCTTGTTGTGACAAAATGGGGTTGAAGAAAGGTCCATGGACAACTGAAGAAGATGAAATTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGAAGTTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCGTCGTTGTGGTAAGAGTTGCCGACTAAGATGGACGAACTACCTGAAACCTGATATTAAACGCGGTCCCTTTACACCTCAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATAGCTTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACTCATGAACCAATAGCCTCATCAAATTACTATCCAATTTCAAAATCAAATTCATCTATCGCCACGCGCCACATGGCTCAATGGGAAAGTGCTAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACTCATGTTTATTCAACAATAACAACATTACTTCTTTTGCAAGTAACAAATCTGATTCTGATTCTGACTATTTCCTTAAGATATGGAACTCCGAAGTTGGACAATCTTTTCGCTCAGTTCGTAAATCAGATGACGGTGACGACGATGATGATAAAACTAGGTGCATAAGTTCCATGTCTCAAGAAGGGTCATCTTGTAATAATACAAAATGTGGATCAGTTTCTGCTACTACGACTATAACAGATTTTGCTTCATCAACTCTTGCAAGCAATGTGAAGGAAGATTTTGAATGGAGAAACTATAAATCATTTGATATTGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCATTGCAGCTCTTGTTGGATTTTCCTTCTAACAATGACATGAGCTTCTTAGAATAA 924 0.3874 MGRTPCCDKMGLKKGPWTTEEDEILVNFIKKNGGHGSWRSLPKLAGLRRCGKSCRLRWTNYLKPDIKRGPFTPQEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSNYYPISKSNSSIATRHMAQWESARLEAEARLSKDSCLFNNNNITSFASNKSDSDSDYFLKIWNSEVGQSFRSVRKSDDGDDDDDKTRCISSMSQEGSSCNNTKCGSVSATTTITDFASSTLASNVKEDFEWRNYKSFDIGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01195 307 FunFam Transcription factor RAX3 7 68 - -
Trre16g01195 307 MobiDBLite consensus disorder prediction 205 236 - -
Trre16g01195 307 SMART sant 13 64 IPR001005 -
Trre16g01195 307 SMART sant 67 115 IPR001005 -
Trre16g01195 307 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Trre16g01195 307 FunFam MYB transcription factor 70 117 - -
Trre16g01195 307 Gene3D - 70 117 - -
Trre16g01195 307 CDD SANT 16 62 IPR001005 -
Trre16g01195 307 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre16g01195 307 Gene3D - 11 68 - -
Trre16g01195 307 MobiDBLite consensus disorder prediction 205 222 - -
Trre16g01195 307 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Trre16g01195 307 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre16g01195 307 CDD SANT 70 113 IPR001005 -
Trre16g01195 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 232 - -
Trre16g01195 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre16g01195 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre16g01195 307 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01195 Trre-Chr16 9474421 9477156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01195 1 307 MYB Transcription Factor Family AT3G61250 60.194 5.41e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g01195 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01195 K09422 - gmx:100800408 396.741