Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01194 ATGAACAATAACAATAGAGCGAGATATCCACCACCTGGGATCGGTCCTGGACGTGGTGGTTCGAATCCCAATGTGAATCTGAACCAAAACCCAAACCAGAACCCTAATTTGAACCATCAGTTTCAGCAAAGAGCACCTTATAATCACCATAACCAGCAACAACAGCTCCAACAACAACCGAATCAGTACCAGCAGCAGCAGCAACAACAACAACAATACTATGCGCAGAGACAAATGGCGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCTGAGAAGGACACAGTTGGGTGGTTCCGAATCGAACGCTGTTGCCGATGAGGTTGAGAAGACCGTGCAATCGGAAGCCATTGACTCGAGTTCTCAAGACTGGAAGGCAGGACTAAAGATTCCGCCAGCTGATACACGTTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATTCCAATAGCTCTTACCGGCAGCGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTCATCTTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATCTGAAAATCCAAGTTATGGTTACAACTGGTGGTACCAGTCTAAAAGATGACATAATGCGTTTATATCAACCGGTTCATCTGCTGGTTGGAACCCCAGGAAGGATATTAGATCTTGCGAAGAAGGGTGTTTGTGTTCTTAAAGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTGCTCTCTCCAGAGTTCCAGCCCTCAATTCAACAGCTTATTAATTTTCTCCCTACAAACCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACCGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTTACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTATTTTCCAAGCTGCAAATAAACCAGTCAATTATCTTTTGCAATTCAGTGAACCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGTTATTCATGCTTCTATATTCACGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTTGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCGGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGTCGGTGA 1584 0.4217 MNNNNRARYPPPGIGPGRGGSNPNVNLNQNPNQNPNLNHQFQQRAPYNHHNQQQQLQQQPNQYQQQQQQQQQYYAQRQMAQQQQQQQQQQQQQQWLRRTQLGGSESNAVADEVEKTVQSEAIDSSSQDWKAGLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLINFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01194 527 Pfam Helicase conserved C-terminal domain 379 485 IPR001650 -
Trre16g01194 527 SMART helicmild6 404 485 IPR001650 -
Trre16g01194 527 MobiDBLite consensus disorder prediction 21 39 - -
Trre16g01194 527 MobiDBLite consensus disorder prediction 1 39 - -
Trre16g01194 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 507 IPR027417 -
Trre16g01194 527 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 65 526 - -
Trre16g01194 527 Pfam DEAD/DEAH box helicase 178 342 IPR011545 GO:0003676|GO:0005524
Trre16g01194 527 CDD DEADc_DDX6 155 355 - -
Trre16g01194 527 FunFam ATP-dependent RNA helicase DDX6 358 527 - -
Trre16g01194 527 Gene3D - 112 357 IPR027417 -
Trre16g01194 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 524 IPR001650 -
Trre16g01194 527 FunFam ATP-dependent RNA helicase DDX6 134 357 - -
Trre16g01194 527 CDD SF2_C_DEAD 365 494 - -
Trre16g01194 527 Coils Coil 63 83 - -
Trre16g01194 527 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 300 308 IPR000629 -
Trre16g01194 527 Gene3D - 358 526 IPR027417 -
Trre16g01194 527 SMART ultradead3 172 368 IPR014001 -
Trre16g01194 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 354 IPR014001 -
Trre16g01194 527 MobiDBLite consensus disorder prediction 102 132 - -
Trre16g01194 527 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01194 Trre-Chr16 9456974 9464918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01194 153 520 Eukaryotic Initiation Factors Gene Family AT3G19760 38.649 2.00e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01194 K12614 - fve:101307921 848.58