Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01184 ATGGATCGAGGCGACCAAATGGCGGCATTATCGGGCTCTGCATCGTACTTTATGCAGAGAGGATTACCTGGTTCTGGTAACCAACATGAATTGCATAATCCGCCCGGTATTCGTCAACTACCGAATACCAATTCACCATTTCAACCAAGTATTGGTGGTACTATTGGATCCACATTGCCGATGGATTCTTCCGGAATTTCATCCCAATGTATCAATGTAGGTGCTCCTTCTGCGGCTGCTTCAACTGGTGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAGTACGGGGCTGACGGAAATGTGTCGTTGGGGTTGACTCCAACAACACCAGCAAGTCAACCTGGATCTGTACCGCAAGTCCAGAAACGCGGTCGCGGACGCCCTCCAGGGTCAGGGAAGAAGCAACAATTGGCTGCTGTTGGTGGTTTGATCTCAAGTTCAGCTGGGAATGGTTTCACACCACATGTTATCAATGTCGCAATTGGAGAGGACATTGCGACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAGCTATATTTGTTATGGCAGCCACTGGCGCTGTCTCTACTGTGACGCTTTGTCAAGCTTCGTCATCTGGGGGATCTGTCACATATGAGGGGCGCTTTGAGATCCTAAGCCTATCAGGCTCTTACTTGGTTGCTGATAATGGTGGCCCCCGAAATCGAACTGGTGCATTAAGCGTTTGTCTTGCAAGTCCTGATGGCCGTGTCATTGGTGGAGGCGTCGGTGGACTGCTCATTGCTGCAAGTTCTGTTCAGGTGATAATTGGGAGCTTTATGTGGGGTGGACAAAAGACAAAGAACAAGAAGAATGAAGATTCGGAAGGTCAAGAAGTTGGTATAGAGGCAGATCATCATCAGCATGGAGTTCACAATCCAGTTCCAATGAACAGCATCTCTTCACCAAATCAAAATCTTACTCCATCAGCTCTCAACTCTTGGCCTGCATCGCGTTCGTTGGATATGCGTAATTCGCATATTGACATTAATTTAATGCGCGGGTGA 1032 0.4787 MDRGDQMAALSGSASYFMQRGLPGSGNQHELHNPPGIRQLPNTNSPFQPSIGGTIGSTLPMDSSGISSQCINVGAPSAAASTGEPVKRKRGRPRKYGADGNVSLGLTPTTPASQPGSVPQVQKRGRGRPPGSGKKQQLAAVGGLISSSAGNGFTPHVINVAIGEDIATKILAFSQQGPRAIFVMAATGAVSTVTLCQASSSGGSVTYEGRFEILSLSGSYLVADNGGPRNRTGALSVCLASPDGRVIGGGVGGLLIAASSVQVIIGSFMWGGQKTKNKKNEDSEGQEVGIEADHHQHGVHNPVPMNSISSPNQNLTPSALNSWPASRSLDMRNSHIDINLMRG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01184 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 57 304 IPR039605 GO:0003680
Trre16g01184 343 MobiDBLite consensus disorder prediction 17 138 - -
Trre16g01184 343 MobiDBLite consensus disorder prediction 296 317 - -
Trre16g01184 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 271 - -
Trre16g01184 343 CDD DUF296 154 245 IPR005175 -
Trre16g01184 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Trre16g01184 343 ProSiteProfiles PPC domain profile profile. 150 291 IPR005175 -
Trre16g01184 343 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Trre16g01184 343 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Trre16g01184 343 MobiDBLite consensus disorder prediction 37 76 - -
Trre16g01184 343 Gene3D - 155 297 - -
Trre16g01184 343 MobiDBLite consensus disorder prediction 302 317 - -
Trre16g01184 343 MobiDBLite consensus disorder prediction 103 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01184 Trre-Chr16 9381673 9385336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01184 1 343 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.863 6.45e-85 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01184 - - gmx:100799791 461.455