Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01180 ATGGGGATTCAGTGCTCGAGATTTTTTCCATGTTGTGTGACTTCGCAAGTTAAAGCATCTGTTCTTGAAACTCCGGATGCTGAAAATGATGATGGAAGTGAGGTTAGTAACTGGCCTACATTCCGTGAATTTACACTCGAGCAACTTAAGAATGCGACATCTGGTTTTGCTGTCGAGAATATTGTATCTGAGCATGGAGAGAAAGCTCCGAATGTTGTTTATAAAGGGAAGCTAGAGAATCAAATGAGAATTGCTGTTAAACGATTTAATAGAAATGCTTGGCCTGATACTCGCCAGTTTTTGGAGGAAGCAAGAGCAGTTGGTCAGCTACGTAACCAAAGATTGGCAAACTTGCTAGGTTGTTGTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAATATATGCCAAATGAAACACTTGCAAAACACCTTTTCCATTGGGAATCGCAACCTATGAAATGGGCGATGCGACTAAGGGTTGTTCTACATCTTGCACAAGCTCTAGAATACTGCACAGGAAAAGGGCGTGCTCTCTATCACGACCTCAATGCATATAGAGTTCTCTTTGATGAGGATGGTAATCCTAGGCTTTCTACTTTTGGACTTATGAAAAATAGCCGTGATGGGAAAAGTTATAGCACAAATTTGGCATTTACTCCTCCAGAGTATCTCAGAACTGGGAGAGTGACACCCGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTTCTCAGTGGAAAACATATCCCCCCGAGTCATGCCCTCGATTTGATCCGGGACAGAAATATTCAGATGCTGACAGATTCTTGTTTGGAAGGACAGTTTTCTGAAAATGATGGAACTGAGCTGGTACGCTTGGCATCTCGATGTTTACAATATGAACCTAGAGAAAGGCCTAATCCAAAATCATTGGTGTCTGCTTTGGCTCCTCTTCAGAAAGAAACTGAGGTTCCTTCACATGTGTTGATGGGTGTCCCACATAGCACAAGTTTTGCTACACTATCTCCACTAGGTGAAGCATGTTCAAGAAAGGACTTAACTGCCATACATGAAGTTCTGGACAATCTTGGTTATAAAGATGATGAAGGAGTAGCAAATGAGCTATCATTCCAGATGTGGACTGATCAAATGCAGGACACGTTAAATTGCAAGAAAAAAGGGGATGCCGCTTTCCGGCAGAAAGATTTTAGAGAAGCGATCGAGTGCTACACACAGTTCATCGATGTTGGAACAATGGTTTCTCCAACAGTCTATGCACGACGCAGTTTGTGTTATCTCATTAGCGACATGGCTCAAGAAGCACTCAACGATGCAATGCAAGCACAAGTTATTTCGCCAGTATGGCACATTGCATCTTATCTTCAATCAGTTTCCCTTGCAACAGTTGGAATGGAGACTGAAGCACAAGCAGCACTTAAAGAAGGCACAACACTCGAATCAAAGCGGAATGGAACTTCGAAACAAAAGTGA 1476 0.4255 MGIQCSRFFPCCVTSQVKASVLETPDAENDDGSEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDTRQFLEEARAVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWESQPMKWAMRLRVVLHLAQALEYCTGKGRALYHDLNAYRVLFDEDGNPRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQFSENDGTELVRLASRCLQYEPRERPNPKSLVSALAPLQKETEVPSHVLMGVPHSTSFATLSPLGEACSRKDLTAIHEVLDNLGYKDDEGVANELSFQMWTDQMQDTLNCKKKGDAAFRQKDFREAIECYTQFIDVGTMVSPTVYARRSLCYLISDMAQEALNDAMQAQVISPVWHIASYLQSVSLATVGMETEAQAALKEGTTLESKRNGTSKQK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01180 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Trre16g01180 491 SUPERFAMILY Protein kinase-like (PK-like) 30 320 IPR011009 -
Trre16g01180 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 19 485 IPR045845 GO:0004672|GO:0009742
Trre16g01180 491 Gene3D Tetratricopeptide repeat domain 380 491 IPR011990 GO:0005515
Trre16g01180 491 SUPERFAMILY TPR-like 381 481 IPR011990 GO:0005515
Trre16g01180 491 FunFam probable serine/threonine-protein kinase At4g35230 380 489 - -
Trre16g01180 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Trre16g01180 491 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Trre16g01180 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Trre16g01180 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Trre16g01180 491 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01180 Trre-Chr16 9357390 9360956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01180 29 313 Glycoside Hydrolase AT3G07070 34.505 4.06e-45 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Trre16g01180 PK_Tyr_Ser-Thr 2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01180 K14500 - gmx:100781311 917.916