Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01161 ATGGCAAAGAAGTCGCAAAGACGCACTGTGCGGTATGAGAAAGATAAGTCGGGATGTATGTGGGGATTTATTAGTATGTTTGATTTTCGCCATGGTCATTTGACTAGGAAGTTGATTGCTGATAAGAGGCAAAGCACCAAGCACTCCGGTGGTGTTGTACATTCTAAGAATAAGTTTGAGGTGTTAAACGATATAGACGAAGTTTGTCAAGACACTTTTGACAATGTAGAGAGTAAAAGACCAACAGTGAGAACTATTATTAATAAGCCGAGTGTGAAGAAACTGATAGAAGAAGAAATGTTCACTGATCAAAATGCAATGAAGGATATAGATAATTCTGAAAGGCGTGAAGTTTTCCGGAAGTTAGATTCCAAAAGAAAAAAGAAATCGTGTGAGAAAAAACATGATATCACCGATGATTTAAATTTTGATGCAACATCAAAATCTGAAACTTCGCATCGTCAGCACTCAAGGAAGCAATCTAAAGATAATCTTGATGTGGATACAATAATCGAAGAGTTTTGTAATCTAAAAGGTGTTCGTTCCATATTACATGGCAATGACGGAGAAGTAGAAAAGCATGCACAACCAAACCAGAAACAGAAGAATGCTGTTTCCGGAAAAAGTTCAAGAGATGCAATTCGTGAATTTGTGAATCAGATGATATTGAACGGAAAAGATCCGGTGGAAGCTAGAAAATTTCTTTTCTCTGATGAACTAATGGAAGCATTTCAGCTTATAAGTTCAGATAAGGAATTGTTTCTTGCATTTCTACAAAATCCAAATCCACTTGTATTGAAATGTGTTAAAGAGTTTGAGAATTCTCAGCGGGAGAACGACGACGAATATAGTCGTGTTACAGGCTGCAAATTCTCGGAACAAGATCACGGCAATAAAGAACAAACTAGTGAGATTGTTAACCAGAAGAAGCATAACTTTTTCAGAAAAAAGGTGAAGTCTCAATCAAAAAGTTCAACAAATGAAAATGGAAATACCACCGGCATTTCAAATAAAATTGTTATTCTAAAGCCAGGACCAAATGCATCGGAAAATTTAAAAACCGGAACCAACCTTGCTTCGTCTCTAGATTCTCACGATACTGTCAAATACAGTAGTCCTTCTGAGAGAGGTAGTTCACATTTTTCGCTTACCGAGATAAAAAAGAAATTAAAGAATGCGATAGGAAGGGAGAGACATGGAAAAGGCATTGGTAAAGACAATGTTGGAATGAGATCTCCTAATAAAGATCATTTCTTCATTGAAAAAATTGCAAGACCTTCAACCGATGTTACTAAAGGAGACAAGACTGGTAAGAATAAAGATTCGGAAGCGGTTGTGGATCGTGAAAAGGGTATTTATCCGAAACAAGGCGTTTCTAATTTATATATCGAGGCTAAGAAACATTTGTGTGAGATGATAGGTAATGAAGATGAAAACACGGACTCGTCAAGTAGGCTAACTTCCAAAACGCTCGGAAGAATAATATCTTTTCCTGATTACAACTTTTCTCCACTTAACAGTCCTGGAAGGGATTGGGAGGATCGGTTTGTGACCGCAAAGAGGAGACTTCATGGTGAAAGCTATAACAATAAGTCACAAGAAATTAAGTCAGACTCGAATTTCTTAGACGGTATAATTAGCGGTGATAAAGAAGAAAATAAGGATGAGATAGTTACTGAAGGTGATGTAGAATCTACAAAAGACGTAACTATTATAGAATCTTCCTCGGAACCAGTTGACCTCAGTGCAAGAAATGAGGAACAATGCCATAATATCTCCGAAAGTTCTGATTGTGCAGGATTTTCTCAATGTTTGGAGCAGGATGTAACAGAAGAAAACCAATCATCGTCTCCAGTTTCATCGACATCTCACTCTTCAATCACTAGGGAAACTAAAGAGCAAGAGATTGTCACTGATGTGTCTGCGCGGCCAAGTCCTGTGTCTGTTCTTGATGCACCATTCTTAGAGGATGATGCCACCTCTGCGAACTCTAGATGTCAACCTGCTGAAGTATCAGTGCAGCCACTACATGTTCAATTTGAAGAGCAAGATTCTTCTCTTGTGAACGAAATCAAGAGAGCAAAATATTGTATCGAAGAAAATGAATCGATATATGGTTACATCGAAGCAGTCCTGCAAGCCTCTGGATTGACAAGAGATCAATTGTTGATGAAATGTCTTTCCTCCGACAAGATACTAGATCCTTCCTTGTTTGATCAGGTAGAATTATCATCGAACTGGCTTTGCCATGACTCGAAACTCCTATATGACTGTATCAATGAAATTCTCATGGAGGTTTGTTGCGATTACTTTGGTGCCTCACCTTTTGTATCTTTTGTAAGTCCTGTTATAAAGCCAACTCCAAATATGAAAACGGTTATTCTCATGGTCTCGGAAGGAGTGTGTTGGCATTTACTTCTCTTGTCCCCGCCACACACGTTGGACAAAATTGTTCGGAAAGACATGGAAAAATGTGGAGCGTGGATGGACCTTCGGTTTGAAGCCGAAACAGTTGGTTTTGAATTAAGCGATGCCATTCTAGAAGAACTGATGGAAGATACTATACTTAGTTGTGCAAGTAAAACTCAAGAAGGTGAAAGTTATGAGCATAACAACGACAAGAACATCACCGATGTGTAA 2640 0.3833 MAKKSQRRTVRYEKDKSGCMWGFISMFDFRHGHLTRKLIADKRQSTKHSGGVVHSKNKFEVLNDIDEVCQDTFDNVESKRPTVRTIINKPSVKKLIEEEMFTDQNAMKDIDNSERREVFRKLDSKRKKKSCEKKHDITDDLNFDATSKSETSHRQHSRKQSKDNLDVDTIIEEFCNLKGVRSILHGNDGEVEKHAQPNQKQKNAVSGKSSRDAIREFVNQMILNGKDPVEARKFLFSDELMEAFQLISSDKELFLAFLQNPNPLVLKCVKEFENSQRENDDEYSRVTGCKFSEQDHGNKEQTSEIVNQKKHNFFRKKVKSQSKSSTNENGNTTGISNKIVILKPGPNASENLKTGTNLASSLDSHDTVKYSSPSERGSSHFSLTEIKKKLKNAIGRERHGKGIGKDNVGMRSPNKDHFFIEKIARPSTDVTKGDKTGKNKDSEAVVDREKGIYPKQGVSNLYIEAKKHLCEMIGNEDENTDSSSRLTSKTLGRIISFPDYNFSPLNSPGRDWEDRFVTAKRRLHGESYNNKSQEIKSDSNFLDGIISGDKEENKDEIVTEGDVESTKDVTIIESSSEPVDLSARNEEQCHNISESSDCAGFSQCLEQDVTEENQSSSPVSSTSHSSITRETKEQEIVTDVSARPSPVSVLDAPFLEDDATSANSRCQPAEVSVQPLHVQFEEQDSSLVNEIKRAKYCIEENESIYGYIEAVLQASGLTRDQLLMKCLSSDKILDPSLFDQVELSSNWLCHDSKLLYDCINEILMEVCCDYFGASPFVSFVSPVIKPTPNMKTVILMVSEGVCWHLLLLSPPHTLDKIVRKDMEKCGAWMDLRFEAETVGFELSDAILEELMEDTILSCASKTQEGESYEHNNDKNITDV 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01161 879 MobiDBLite consensus disorder prediction 609 627 - -
Trre16g01161 879 MobiDBLite consensus disorder prediction 319 338 - -
Trre16g01161 879 Pfam Protein of unknown function (DUF3741) 219 262 IPR022212 -
Trre16g01161 879 MobiDBLite consensus disorder prediction 189 211 - -
Trre16g01161 879 MobiDBLite consensus disorder prediction 349 380 - -
Trre16g01161 879 Pfam Domain of unknown function (DUF4378) 707 853 IPR025486 -
Trre16g01161 879 MobiDBLite consensus disorder prediction 609 642 - -
Trre16g01161 879 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 858 - -
Trre16g01161 879 MobiDBLite consensus disorder prediction 316 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01161 Trre-Chr16 9211395 9215197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01161 1 843 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 34.378 1.59e-118 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01161 - - tpra:123883590 1597.79