Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01158 ATGGCTTTGGTAAGTTCTATGAACTCAATTATGGCTAATCCAAGTGAGGTTAGTGACACAATTTATGTTGCTGTGGCTAAAGATGTGAAAGATAGTAAATTAAATGTGATATGGGCAATACAAAATTCTGGTGGAAAGAGTATTTGTATTCTTCATGTGCATGTGCCAGCTCCAAAGATCCCTATGATGGGAGCTAAATTTCCAGCAAATGCATTGACAAGGCAAGAAGTTAAAGCATACAGGGAAATTGAAAGTCAAGACATGCATAAGACTCTTGATTCTTATCTTCTTATCTGTCAAAGAATGGGGGTGAGGGCAAATAAATTGCACATTGAAATGGATTGTATTGAAAAAGGGATTATAGAACTTATATCCCAACATAACATACAAAACCTTGTAATGGGAGCAGCTTCTGATAAGTACCATTCTAGGAGAATGACAGGTCTCAGATCTAAAAAAGCCATCTATGTATGTGAACAAGCTCCAGCTTCTTGTCATATACAGTTTATCTGCAAAGGTTATCTTATACAAACAAGGGATTGCAGTTTGGATAAACTTAGAGTAGAGGGCACATCTCCATTGGCAAAGCAAATGCAAAACTCTGAAGTTGGTCACTCACCTCATCAATTAAGATCTAAATCAATTTCACATGATGAGTTACTTAGTGTAAGATCTATGAGCTCAGTATCTGAAAGTGGAAGGAGCATAGCATCATCTGTTTCTTCTTCAGAATGGTTTTCAACTTCACAAAGCAAGTTTGATAAAGAACCAAGTTTGAGTCCTTCACCTTCATCAGTTGAAACTGCAGCAGCATTGAACACAAATTTGATTAGTATCAAAGAAGAGGATCTTTATCATTCATCACCTCCAAGTGTGCTGGATGGAGGAAGGGATGATAGTTTGTATGATCAACTTGAACAGGCTATGTCTGAGGCTGAGAAGGCTAGGTGGGATGTGTATCAAGAAACTGTTAGGCGTCGGAAAGCTGAAAAAGATGTCATTGATGCTTTACGCAAGACTACAGACATCAAAATCTTGTACGAAGAAGAGGTGAAACTACGGAAAGACTTAGAGGAGGCTTTAGAGAAAGCAAAAGAAGAAATCGACAACATGAGACACAAAATAGAACAAGTCAATAAGGAACTCGAACTTGCCTTGCATCACAAGTCATCAACAGAGAATCAAATTGGTGAACCCTCAAGAACACAATCTCTTCAACTTTTGTCAGATTTTTCTTTTTCAGAGATTGAAGAAGCAACATGTAACTTCAATCCATCGTTAAAGATTGGTGAAGGCGGATACGGAAGTATATTTAAAGGCAGTCTTCGTCACACTGAAGTGGCTATAAAAATATTGAACCCTAACAGCACTCAAGGACCCTCAGAGTTTCAACAAGAGGTTACGGTATTAAGCAAGTTAAGGCATCCAAATCTTGTCACACTTATAGGAGCAAACCAAGAATCAAGAACTCTTATCTATGAATATTTACCAAATGGAAGCCTCGAGGATCATCTCAGCCGCAACGACAGTAATACCTCTCCATTATCATGGCAGACTCGAATTCGCATCGCGACAGAATTATGTTCTGCTCTAATTTTTCTCCATGCCAATAAACCTCACAGCATAGTGCATGGTGATTTAAAACCTTCCAACATACTTCTTGATGCAAATTTTGTAAGCAAGCTTAGTGACTTTGGAATCTGTCGTATATTATCGTGTCAAGACGATTCTTCAAGTAAAAATAATAGTACACAGTTTTGGATTACTAAATTTGCAAAGGGAACTTTTGCATACATGGATCCTGAATTCTTTGGTACAGGTGAACTTACTACAAAATCAGATGTTTATTCATTTGGAATTGTGTTATTGAGATTGATAACTGGAAAACCAGCATTAGGAATAAAGAATGAAGTGTTAGATGCATTAAATAATGCTGATGGAGAATTGAAATCACTTTTGGATCCTTTAGCTGGAGATTGGCCTATTTCGGAAGCCGAAAATTTGATTCATTTGGCTTTAAGGTGTTGTGATATGAATAAAAGGAGAAGGCCAGAACTTTGTTCAGATGTGTGGAAAGTGTTGGAACCAATGAGAGCTTCTTGTAGTAGTCGCGCAATCACGAACACTTTCGGTCTTAAGTCCTGTTTGGATAAACAACTTAATAGAAAGACTTAA 2175 0.3752 MALVSSMNSIMANPSEVSDTIYVAVAKDVKDSKLNVIWAIQNSGGKSICILHVHVPAPKIPMMGAKFPANALTRQEVKAYREIESQDMHKTLDSYLLICQRMGVRANKLHIEMDCIEKGIIELISQHNIQNLVMGAASDKYHSRRMTGLRSKKAIYVCEQAPASCHIQFICKGYLIQTRDCSLDKLRVEGTSPLAKQMQNSEVGHSPHQLRSKSISHDELLSVRSMSSVSESGRSIASSVSSSEWFSTSQSKFDKEPSLSPSPSSVETAAALNTNLISIKEEDLYHSSPPSVLDGGRDDSLYDQLEQAMSEAEKARWDVYQETVRRRKAEKDVIDALRKTTDIKILYEEEVKLRKDLEEALEKAKEEIDNMRHKIEQVNKELELALHHKSSTENQIGEPSRTQSLQLLSDFSFSEIEEATCNFNPSLKIGEGGYGSIFKGSLRHTEVAIKILNPNSTQGPSEFQQEVTVLSKLRHPNLVTLIGANQESRTLIYEYLPNGSLEDHLSRNDSNTSPLSWQTRIRIATELCSALIFLHANKPHSIVHGDLKPSNILLDANFVSKLSDFGICRILSCQDDSSSKNNSTQFWITKFAKGTFAYMDPEFFGTGELTTKSDVYSFGIVLLRLITGKPALGIKNEVLDALNNADGELKSLLDPLAGDWPISEAENLIHLALRCCDMNKRRRPELCSDVWKVLEPMRASCSSRAITNTFGLKSCLDKQLNRKT 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01158 724 CDD STK_N 20 173 - -
Trre16g01158 724 MobiDBLite consensus disorder prediction 194 210 - -
Trre16g01158 724 MobiDBLite consensus disorder prediction 194 215 - -
Trre16g01158 724 ProSiteProfiles Protein kinase domain profile. 423 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01158 724 ProSitePatterns Protein kinases ATP-binding region signature. 429 450 IPR017441 GO:0005524
Trre16g01158 724 Coils Coil 343 395 - -
Trre16g01158 724 PANTHER OS02G0152300 PROTEIN 21 700 - -
Trre16g01158 724 Pfam Protein kinase domain 427 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01158 724 SUPERFAMILY Protein kinase-like (PK-like) 404 695 IPR011009 -
Trre16g01158 724 FunFam receptor-like protein kinase FERONIA 386 495 - -
Trre16g01158 724 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 37 148 - -
Trre16g01158 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Trre16g01158 724 Coils Coil 302 322 - -
Trre16g01158 724 SMART serkin_6 423 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01158 724 Gene3D Phosphorylase Kinase; domain 1 393 495 - -
Trre16g01158 724 Gene3D Transferase(Phosphotransferase) domain 1 496 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01158 Trre-Chr16 9175837 9180276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01158 10 700 U-box Gene Family AT2G45910 46.854 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre16g01158 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01158 - - tpra:123883511 1207.2