Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01150 ATGCAGTCCGGTGGTGGTGGGCCTGGCCGGACGGCGGGGCGGGCGTCGACATCGTCGGCAGCTGCTTCGCCGTCTTCTTCGTCTTCGGCATCACAGTTAGGGTTTGAATCTTTGCAGCAGCAACATCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACATCAACAGCAGCAGCAGATAGGTTCTAGGCAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGGAATGAAGCATTCTTAGCTTATCAAGCAGGGCGTCAAGGTGCATTTGGGAGTAACAACTTCTCACCTCCTAATGCTATGCAAATGCCTCAGCAGTCTCAAAAGTTCATGGGTTTAGGTCAACATGGTTCCAACCAAGATGCCCAGCTCAGAGGTCAAGGTAGTGAGCAGCAGCAAATGTTAAACCCTGTGCAGCAAGCATACCTTCAATATGCTGCTTTCCAGCAGGCTGCGCAACAAAAGCAGCCTGCTTTGGGAATTCATCCGCAGCAGCAAACTAAGATGGGAATGTTAAACCCTGCATCTGTAAAAGATCAGGAAATGCGTATGGGGAATCTGAAAATGCAGGACATTATGTCAATGCAGGCAATGAATCAAACTCAAGGGTCGTCTTCGAGGAGTTCATCTGAACATGTTTCTCGTGGAGAAAAGCCGATGGAGCAAGGACAGCAGATAAGACCTCTTCAAGCACCGGAAGCACAGCATGGCAACCAAAATGTAATGAACAGCCAGATTGCAGTAGCTGCTCAATTGCAGGCCATGCAGGCATGGGCGCGTGAAAACAATATCGATTTATCACATCCTACAAATGCAAATTTAATGGCAAAGCTCATTCCAATGATGCAGTCAAGGATGGTCATACAACCACCAAAGGCCACCGAGAGCAACATTGGTGCACATTCGTCACCTGTCCCGGTTTCGAAGCAGCAGGTTAATTCTCCAGCAGTTGCAAGTGAGAGCTCAGCACATGCTAATTCATCAAGTGATGTGTCTGGACAGTCAGGTTCTTCGAAAGCCAGACATACTGTTCCCCCCAGCCATCTTGGCTCAACAACAAATGCTGGTCACTCCAGTGACATGGCCATGCAGCAAATCAATGTTCATGGTAGAGAGTCTCAAGCTCCTCTGAGGCAACAAGTAAAACCTGGAAATGGAATGCCCTCTATGCATTCTCAGCAATCTTCTGCATCCATGAACTTAGGTGCAGCAGACCATCCTTTGAATGCAAAAGGTTCATCTTCTGGTTCAGAGCCTCCTCAAATGCAGTATATTAGGCCGTCAAACCAATCTACTACTCATGTTGAAGCTCCAACAAAAGAAGGGGGTTCGGGAAATTATGCTAAATCTCAAGGGGCACCAGCTCAGATACCTGAGCGGCAAAGTGCATTTACCAAGCAACAGCTACATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGATAAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTACTTCAGGCTATCACTCCACCGCCTCTTGAGATGCAGGCAAAACAACCAAACCATCCTGCAGGAGGACAAAATCAAGTCAAATCTGCTGGTAATATTGTTGCAGAACAATCACGGCATGCTGAGGCCAATGCCAAAGAATCACAATCTATTTCTGCTGTTAATGGACACAGTTCTGTAAAGCAGGAATCCTTTTCAAGAGATGACAAATCTGCTCCACCACCAGTTCATACTCAAGCTGTTATGCCATCTATATCAAAGGAATCTGCTTCGACATCATCTGCAGGAAAGGAAGAGCAGAAAACAATTGGATCCTCTTTTAAGCAAAAGCAGGATAGTGAACATGGAAATAACAGTACTCCTGTTAGAAATGAGTTGGCATTAGATAGGGGAAAGGCTATTGTATCACAGGCCCCTGTATCTGACACGCTACAAATTACAAAACCTGCACAAGCTACCCCTGTTTCTCAGCCAAAGGATGTTGGACCGACCAGAAAATATCATGGACCCCTGTTTGATTTTCCTTTCTTCACTAGGAAACATGACTCTTTTGGGTCATCAATGATGGTAAACAACAACAATAATTTATCGCTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGCAGAAGTACTTAGCAAGAAACGGACAGAAAATTTAAAGAAGATTGAAGGTTTGCTGTCTGTGAACTTGGAGAGGAAACGAATTAGACCTGACCTTGTGTTGAGACTGCAAATTGAAGAGAAAAAGCTCCGCCTCTTAGATGTCCAGACACGTTTGAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAACGTCAGCGTTTGGAACTTGTTAGGCAAGTGCAGGCATCTCAGAGAGCTGCAAGGGAGAAGCAACTCAAATCTATATTTTTATGGCGCAAGAAACTTCTTGAGGCGCACTGGGCAATTCGTGATGCCCGTACTGCCCGCAACAGGGGGGTGGGTAAATATCATGAGAGAATGTTGCGGGAATTCTCAAAACGTAAAGATGACGATCGAAGCAAAAGGTTGGAAGCCTTAAAAAACAACGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATTCCAGGTGATGCAGCAGAGAGATATGCTGTTCTCTCATCCTTCTTAAGCCAGACGGAAGAGTATCTACATAAATTAGGAAGCAAGATAACAGCTGCAAAAAATCAACAGGAAGTAGAAGAGGCAGCAAAAGCAGCTGCAGATGCTGCACGATTGCAAGGTCTTTCTGAAGAAGAAGTCAGAGCTGCTGCTGCTTGTGCCGGAGAGGAAGTGATGATTAGGAATCGTTTTACGGAGATGAATGCTCCTAGAGACAGTTCATCCGTCAACAAGTATTACAACCTCGCACACGCGGTGAATGAAATGGTCGTAAGACCTCCATCCCTATTGCGGGCTGGAACATTGAGAGACTATCAGCTTGTTGGATTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTGGCAGACGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGCCCACATCTCATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTATATAAGTGGTTACCATCTGTGTCGTGCATTTTTTATGCCGGAGGGAAGGATTATCGAACAAAGCTATTTCATCAAGTTTCTGCTCTGAAATTTAATGTCTTGGTGACTACTTATGAGTTCATCATGTATGACCGTTCAAAACTTTCAAAAATTGATTGGAAGTATATCGTTATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTTTAGCACGTGATCTTGATAGGTATCGTTGTCAACGACGCCTGCTTTTGACAGGAACGCCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTGCTACTCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTCCCACCAAAGGACTCGATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTATGATTGGGTCAAATCAACTGGCACCCTTCGTCTTGATCCCGAGGATGAGGAACGTAAGCTTCAGAGGAATCCTAACTACCCGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGGAAAACTTGCAATCATCCGTTGCTTAATTACCCATTCTTCAGTGACTTATCTAAAGAATTCATCGTAAAATCTTGTGGAAAACTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACACCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAGTTTAGAAGACCGTGAATCAGCTATAAATGACTTCAATGCCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCCGGAAGAGGCCTTAACCTTCAGTCTGCTGATACAGTTGTTATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAGGCTGTTGCAAGAGCTCATCGCATTGGACAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGACAAAATCCCTAGTCATCAGAAGGAGGATGAAATGAGAGGTGGAGGCACTGTTGATCTGGATGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTCATAAGGAACAATATTCAGCAATATAAGATAGATATGGCTGATGAGGTAATTAATGCTGGACGTTTTGATCAAAGAACAACGCATGAAGAAAGGCGGTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCGTCATTGCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGATGATGAGCTGGATTGGATTGATGAGATGACACGTTACGATCACATCCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATGCTGCTATTGCTGCTTTATCAAAAAGACCATTAAAGAAAGCTTTATTGGGCGGCAGTGTTGGCATGGAAACAAGTGAACTTGGTTCAGAAAGGAAAAGAGGGAGACCCAAAAAGCATACTAGTTATAAAGAGCTGGAAGATGAAGATTTGGAATACTCTGAAGCAAGCTCTGAAGAAAGAAATGGATATGCAAATGAAGAAGGGGAAATAGGAGATTTCGAAGATGATGGGTATAGTGGAGCTGATGGAGCTCAGCCCATTGCTAAAGATCAGCTGGAAGATGGTAGATATGAATTTCCTCCATCTTTAGAAATCGTCAGTAATCAGGCGGTTCAAGAAGCTGGTTCCTCTGGTTCTGGGTCGTCCGCAGACTGTCAAAAATTGAAACAGATAGTATCACCATCAATTTCCTCTCAGAAATTTGGTTCCCTGTCTGCATTAGATGCCCGACCAGGTTCTGTTTCAAAAAGGATGACGGATGACTTAGAGGAAGGGGAAATTGCAGTATCCGTTGATTCCCACATGGAGCATCAGCAGTCTGAAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTCTGCAGAAACCAAAGATTAAACGCAAACGTAGTCTTCGTGTTCGACCCCGTCATGCCACTGAAAGACCTGAAGAAAAGTCTGGTGGTGAAATGACACCTCGTTTGTCAGTTCTAGCAGACCGTAAATATCAAGCACGGCTGAGAACTGACCTAGAATCAAAACCACACGTAGATTCTAATGCCAGCAGGAATGATCAAAATTCTTCAATAAAAAATAAGCGAACTTTACCTTCAAGGAGGGTTGCTAATACATCCAAATTACATGGCTCACCAAAGCCTACTCGTTTGAATAGCATATCTGCTCCTTCAGAGGATGGTGGTGAATATTCCAGGGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGATCTTCTGCTCATGGCTCTAGGATGACAGAAATCATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGGATAGACAAGGAAGGCCAACAAATTGTACCTCTATTAACAGATTTGTGGAAGAGGATTGAGAATTCTGGCTACAGTGGTGGGTCTGGGAATAGTCTGTTGGATTTACGAAAGATTGATCAGCGGATTGAGAAATTGGAGTATAATGGAGCAACAGATCTTGTATCCGATGTGCAGCTTATGTTAAAGAGTGCAATGCATTATTATGGTTTTTCCCTTGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTCGATATATTGAAAATTGCATTTCCCGATACCGACTTCCGAGACGCAAGAAGTGCACTCTCTTTCACTGGTCCAATTTCTGTCACCACCAATGTATCGTCTCCAAGGCAAGTGGCTGTCGGCCAAAGCAAGCGACACAGGCTGATAAACGAGGTGGATACCGATCTACACCCTCCACAGAGACCGCTACAACGCGGATCAGGTTCTAGCGGCGAAAACAGCAGGATTAGAGTCCGCGTGCCACCAAAGGAATCAAGATCCGGATATGGTAGCGGTAGCAGCATGCGAGAGCAACCTCAGGAGCAGGATGATTCTCCTCCGCTGCTCACTCATCCAGGTGAACTTGTTGTATGCAAGAAAAGAAGAAATGACCGGGAGAAATCATTGGCTAAACCTCGGCCTGGTCCTGTTTCACCATCTATGAGAAGTCCCGGGGCAGGTTCAGTCCCTAAAGATGTTAGATTATCTCAACAGACTCAAGGATGGGTTGGCCAACCATCTTCTCAACAACCAAATGGGTCAGTTGGATGGGCAAATCCTGTAAAGAGACTAAGAACTGATTCTGCTAAGAGGAGACCAAGTCATATGTAA 6633 0.4389 MQSGGGGPGRTAGRASTSSAAASPSSSSSASQLGFESLQQQHQQQQQQQQQQQHQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAGRQGAFGSNNFSPPNAMQMPQQSQKFMGLGQHGSNQDAQLRGQGSEQQQMLNPVQQAYLQYAAFQQAAQQKQPALGIHPQQQTKMGMLNPASVKDQEMRMGNLKMQDIMSMQAMNQTQGSSSRSSSEHVSRGEKPMEQGQQIRPLQAPEAQHGNQNVMNSQIAVAAQLQAMQAWARENNIDLSHPTNANLMAKLIPMMQSRMVIQPPKATESNIGAHSSPVPVSKQQVNSPAVASESSAHANSSSDVSGQSGSSKARHTVPPSHLGSTTNAGHSSDMAMQQINVHGRESQAPLRQQVKPGNGMPSMHSQQSSASMNLGAADHPLNAKGSSSGSEPPQMQYIRPSNQSTTHVEAPTKEGGSGNYAKSQGAPAQIPERQSAFTKQQLHVLKAQILAFRRIKKGEGTLPQELLQAITPPPLEMQAKQPNHPAGGQNQVKSAGNIVAEQSRHAEANAKESQSISAVNGHSSVKQESFSRDDKSAPPPVHTQAVMPSISKESASTSSAGKEEQKTIGSSFKQKQDSEHGNNSTPVRNELALDRGKAIVSQAPVSDTLQITKPAQATPVSQPKDVGPTRKYHGPLFDFPFFTRKHDSFGSSMMVNNNNNLSLAYDVKDLLFEEGAEVLSKKRTENLKKIEGLLSVNLERKRIRPDLVLRLQIEEKKLRLLDVQTRLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRLELVRQVQASQRAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVGKYHERMLREFSKRKDDDRSKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSSFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAADAARLQGLSEEEVRAAAACAGEEVMIRNRFTEMNAPRDSSSVNKYYNLAHAVNEMVVRPPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDYRTKLFHQVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGATQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYPVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNAPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGGGTVDLDDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDEMTRYDHIPKWIRANTKEVNAAIAALSKRPLKKALLGGSVGMETSELGSERKRGRPKKHTSYKELEDEDLEYSEASSEERNGYANEEGEIGDFEDDGYSGADGAQPIAKDQLEDGRYEFPPSLEIVSNQAVQEAGSSGSGSSADCQKLKQIVSPSISSQKFGSLSALDARPGSVSKRMTDDLEEGEIAVSVDSHMEHQQSESWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERPEEKSGGEMTPRLSVLADRKYQARLRTDLESKPHVDSNASRNDQNSSIKNKRTLPSRRVANTSKLHGSPKPTRLNSISAPSEDGGEYSRESWEGKPINSSGSSAHGSRMTEIIQRRCKNVISKLQRRIDKEGQQIVPLLTDLWKRIENSGYSGGSGNSLLDLRKIDQRIEKLEYNGATDLVSDVQLMLKSAMHYYGFSLEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFTGPISVTTNVSSPRQVAVGQSKRHRLINEVDTDLHPPQRPLQRGSGSSGENSRIRVRVPPKESRSGYGSGSSMREQPQEQDDSPPLLTHPGELVVCKKRRNDREKSLAKPRPGPVSPSMRSPGAGSVPKDVRLSQQTQGWVGQPSSQQPNGSVGWANPVKRLRTDSAKRRPSHM 2210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01150 2210 MobiDBLite consensus disorder prediction 537 554 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 1840 1884 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 1 69 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 411 459 - -
Trre16g01150 2210 FunFam ATP-dependent helicase BRM 1230 1440 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 575 615 - -
Trre16g01150 2210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1561 IPR027417 -
Trre16g01150 2210 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1003 1167 IPR014001 -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 1611 1631 - -
Trre16g01150 2210 SUPERFAMILY Bromodomain 1963 2024 IPR036427 GO:0005515
Trre16g01150 2210 SMART QLQ_2 463 500 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g01150 2210 MobiDBLite consensus disorder prediction 372 403 - -
Trre16g01150 2210 Pfam SNF2-related domain 994 1297 IPR000330 GO:0005524|GO:0140658
Trre16g01150 2210 CDD SF2_C_SNF 1310 1441 - -
Trre16g01150 2210 PANTHER SNF2/RAD54 HELICASE FAMILY 704 1775 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 372 459 - -
Trre16g01150 2210 SMART ultradead3 987 1175 IPR014001 -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 1756 1817 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 531 615 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 292 358 - -
Trre16g01150 2210 Gene3D - 1230 1440 IPR027417 -
Trre16g01150 2210 Gene3D - 983 1229 IPR038718 -
Trre16g01150 2210 FunFam ATP-dependent helicase BRM 982 1229 - -
Trre16g01150 2210 ProSiteProfiles QLQ domain profile. 464 500 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g01150 2210 CDD Bromodomain 1963 2018 - -
Trre16g01150 2210 Coils Coil 1537 1557 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 1763 1785 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 2166 2190 - -
Trre16g01150 2210 SMART helicmild6 1347 1431 IPR001650 -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 198 229 - -
Trre16g01150 2210 FunFam Brahma1 1910 2033 - -
Trre16g01150 2210 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1321 1498 IPR001650 -
Trre16g01150 2210 SMART bromo_6 1908 2023 IPR001487 GO:0005515
Trre16g01150 2210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1220 IPR027417 -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 1895 1910 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 2101 2119 - -
Trre16g01150 2210 Coils Coil 35 55 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 2129 2145 - -
Trre16g01150 2210 Pfam Helicase conserved C-terminal domain 1320 1431 IPR001650 -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 112 133 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 2047 2210 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 1830 1910 - -
Trre16g01150 2210 MobiDBLite consensus disorder prediction 1607 1670 - -
Trre16g01150 2210 Pfam QLQ 464 498 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g01150 2210 Gene3D - 1910 2034 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01150 Trre-Chr16 9067089 9078493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01150 1012 1456 RAD5 or RAD16-like Gene Family AT1G02670 26.104 4.51e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre16g01150 SNF2_N 4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01150 - - gmx:100807104 3341.98