Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01145 ATGACGTATGAAAAACTCTTTTTTCAGTGTCCACCGATTTTAGAAGAGCGCGACGCTTTAACCTCTACCGATGGTGCGACCGATTCACTCACTGCTGGATTGCTGGTAGGTTTGAATGTGGAAGGATCCACACCTGATACTTACCAGTCTCCTCCTGCACCTCTGCCTTATGATGTGGTTTTGGGAGGTACAGCGTCGACAGACTCTGAGTCAGGCAGAGACACTGTTGTTAGTGGTAGTAGTTTTGAAACTTTAATTACATGTGAAGATATTGAAGAATCTGACCCTAAAGCTCAAGCTAAATCTGCACCAATATCTCCAAGCAAGGCAGAACTGTGGAAATCAAGTGAACCTCATGCATTGGTGATAGAAGAAGAGGACGGCTGTCCAATTTGCCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTTACAAAATGTGACCACCACTTTCACCTAGCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCTTGTCCTATATGTGATCAGGAAATGATATTTGATGAAGCACTGGACTAG 543 0.4309 MTYEKLFFQCPPILEERDALTSTDGATDSLTAGLLVGLNVEGSTPDTYQSPPAPLPYDVVLGGTASTDSESGRDTVVSGSSFETLITCEDIEESDPKAQAKSAPISPSKAELWKSSEPHALVIEEEDGCPICLEEYDVENPKTLTKCDHHFHLACILEWMERSDSCPICDQEMIFDEALD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01145 180 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 27 177 - -
Trre16g01145 180 SUPERFAMILY RING/U-box 121 176 - -
Trre16g01145 180 SMART ring_2 129 169 IPR001841 -
Trre16g01145 180 FunFam Putative E3 ubiquitin-protein ligase RHB1A 105 174 - -
Trre16g01145 180 Pfam Ring finger domain 129 169 IPR001841 -
Trre16g01145 180 ProSiteProfiles Zinc finger RING-type profile. 129 170 IPR001841 -
Trre16g01145 180 CDD RING-H2_AIRP1-like 125 173 - -
Trre16g01145 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 178 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01145 Trre-Chr16 8998150 8999319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01145 6 180 C3H Transcription Factor Family AT4G00335 53.107 2.90e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01145 - - tpra:123885727 327.02