Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01143 ATGACTACAACTTTTGTTCATAATCGGAGCCAACACTCCGGTCACCGGAGTACGCCGGATAATATGTCCCGTTCTTCTGATTTCAGCACTTCACATCACTCAACAACCTCTGAATCGTCTTCTTCCGGCAGCCGGAATCCAGTTATTGCCGCCGCCATGTCGGTTGCTGGATTGTTTGCTGCTTGTTTCACGCCGCCGGATGGTAATAATTCTAAGAGCGTTGTAGATTCTGAGGAGTTCAAATCTACTACTTCTGCTTCTGTTGCATCAAATGCTTCAAGAGCTGGTAGTCAGAGAGGGCGTGGCTCAAACCGAGGTACCAACATCAGTTTATACAACAACACAATCCAGGGGAATGAGCCTGGCATTGTCAAGTACACCATGGAGGAAATCATCCAAGCCACAAGAAATTTCTCTCCTTCTTTCAAGATTGGTCAAGGCGGTTTTGGGGCAGTCTACAAGACCAAACTCCGGGATGGAACTATTGTTGCAGTAAAGCGAGCTAAGAAGAGTGTGCAAGAGAAAAGTTTAGGTTCGGAGTTCCAGAGCGAGGTCCAAACACTATCAAGGGTCGAACATTTGAACTTGGTAAAGTTCTATGGATATTTGGAGCAAGGGGATGAAAGAATCATTGTAGTAGAGTATGTTCCTAATGGAACACTCAGAGAGCATTTAGATTGCATTCATGGAAACATTCTCGACCTTGCTGCTCGTCTAGACATTGCAATTGATGTATCCCATGCTCTCACCTATCTTCATGTGTATATGGATCATCCTATCATTCATAGAGACATAAAATCTTCCAACATTCTCCTCACCGAGCACTTTCGAGCTAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCACCGGACAGTGACTCTGGCATGACACATGTCTCCACTCAAGTTAAGGGAACAGCAGGCTACTTGGACCCTGAATACTTGAAAACCTATCAACTTACTGAAAAGAGTGACGTCTATTCATTCGGTGTTTTGCTTGTTGAACTTGTCACAGGAAGACGCCCCATTGAACCAAAATTTGAACTCAAAGAGAGAATAACAGTAAAATGGGCTATGAAGAGGTTTATAGAGGGAAACGCGATTTCAGTCTTGGACCCAAGACTGGATCAAACTTCTGCAAATAATTTGGCCTTAGAAAAGATACTTGAACTAGCTTTACAATGCTTGGCTCCTCATAGACAAAGCAGGCCTAACATGAAGAGATGTGCCGAGGTCCTTTGGGCTATTCGCAAGGATTACAGGGAGATATCAGCTTCAAACTTTCGATCATATTCAACTACTTCCCAAAGGAGCACCTCATTGAGAGAGTAA 1332 0.4392 MTTTFVHNRSQHSGHRSTPDNMSRSSDFSTSHHSTTSESSSSGSRNPVIAAAMSVAGLFAACFTPPDGNNSKSVVDSEEFKSTTSASVASNASRAGSQRGRGSNRGTNISLYNNTIQGNEPGIVKYTMEEIIQATRNFSPSFKIGQGGFGAVYKTKLRDGTIVAVKRAKKSVQEKSLGSEFQSEVQTLSRVEHLNLVKFYGYLEQGDERIIVVEYVPNGTLREHLDCIHGNILDLAARLDIAIDVSHALTYLHVYMDHPIIHRDIKSSNILLTEHFRAKVADFGFARQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITVKWAMKRFIEGNAISVLDPRLDQTSANNLALEKILELALQCLAPHRQSRPNMKRCAEVLWAIRKDYREISASNFRSYSTTSQRSTSLRE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01143 443 PANTHER OS01G0750732 PROTEIN 33 424 - -
Trre16g01143 443 MobiDBLite consensus disorder prediction 82 113 - -
Trre16g01143 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Trre16g01143 443 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 216 427 - -
Trre16g01143 443 Pfam Protein kinase domain 143 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01143 443 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 97 215 - -
Trre16g01143 443 SUPERFAMILY Protein kinase-like (PK-like) 121 416 IPR011009 -
Trre16g01143 443 CDD STKc_IRAK 144 413 - -
Trre16g01143 443 SMART serkin_6 138 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01143 443 ProSiteProfiles Protein kinase domain profile. 138 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01143 443 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Trre16g01143 443 MobiDBLite consensus disorder prediction 1 45 - -
Trre16g01143 443 Gene3D Phosphorylase Kinase; domain 1 102 215 - -
Trre16g01143 443 Gene3D Transferase(Phosphotransferase) domain 1 216 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01143 Trre-Chr16 8984055 8987809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01143 105 416 Receptor kinase-like Gene Family AT1G30570 43.269 3.59e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Trre16g01143 Pkinase 3.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01143 - - cam:101500599 714.531