Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g01136 | ATGGGTTTTCCGGTGGGTTACGCCGAAGTATTCTTCCCAAACTTATTCCTTCACACTTTAACTCTCCTCGGACTCCTCCGAAACCTCGTCTTCTTCCTCTTCCACTTCCTCGGCCTCTCCGATTTCCTCGAAACCGACACTGTCTGGCCTCACAACGGAGAAGCCACTCAAACACAAGAACTTTCCAAATCCCCCTCCGTGTCGGCGGTTCTGATCCGGGAACTTTTACCGGCGACGAAGTACGGCGAACTTGCCGGCGGCGTTGAAGAAGGTTGTTGCTGTGCTGTTTGTTTGTTTGAATTCTCAGAGGAAGAAGAGATCCGGTGTTTAAGAAACTGTCGACATATTTTTCATCGAAATTGTGTCGACCGTTGGATTGATCTTGATATGAAAACATGTCCTCTTTGTAGAACTGGTTTTGTTCCTGATGATATGATTGATGATTATAATCAACGGTTATGGGTTGCTTCTGGTGTTAGTGAGTTTTATAGTTATGCAGATTATACTTCTTCTTTTTAG | 519 | 0.4489 | MGFPVGYAEVFFPNLFLHTLTLLGLLRNLVFFLFHFLGLSDFLETDTVWPHNGEATQTQELSKSPSVSAVLIRELLPATKYGELAGGVEEGCCCAVCLFEFSEEEEIRCLRNCRHIFHRNCVDRWIDLDMKTCPLCRTGFVPDDMIDDYNQRLWVASGVSEFYSYADYTSSF | 172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g01136 | 172 | ProSiteProfiles | Zinc finger RING-type profile. | 94 | 137 | IPR001841 | - | |
Trre16g01136 | 172 | SMART | ring_2 | 94 | 136 | IPR001841 | - | |
Trre16g01136 | 172 | SUPERFAMILY | RING/U-box | 93 | 145 | - | - | |
Trre16g01136 | 172 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 29 | 147 | - | - | |
Trre16g01136 | 172 | Pfam | Ring finger domain | 94 | 137 | IPR001841 | - | |
Trre16g01136 | 172 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 141 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g01136 | Trre-Chr16 | 8936022 | 8936540 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g01136 | 1 | 159 | C3H Transcription Factor Family | AT1G63840 | 45.399 | 5.66e-47 | 149 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g01136 | K16281 | - | gmx:100500261 | 244.588 |