Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01136 ATGGGTTTTCCGGTGGGTTACGCCGAAGTATTCTTCCCAAACTTATTCCTTCACACTTTAACTCTCCTCGGACTCCTCCGAAACCTCGTCTTCTTCCTCTTCCACTTCCTCGGCCTCTCCGATTTCCTCGAAACCGACACTGTCTGGCCTCACAACGGAGAAGCCACTCAAACACAAGAACTTTCCAAATCCCCCTCCGTGTCGGCGGTTCTGATCCGGGAACTTTTACCGGCGACGAAGTACGGCGAACTTGCCGGCGGCGTTGAAGAAGGTTGTTGCTGTGCTGTTTGTTTGTTTGAATTCTCAGAGGAAGAAGAGATCCGGTGTTTAAGAAACTGTCGACATATTTTTCATCGAAATTGTGTCGACCGTTGGATTGATCTTGATATGAAAACATGTCCTCTTTGTAGAACTGGTTTTGTTCCTGATGATATGATTGATGATTATAATCAACGGTTATGGGTTGCTTCTGGTGTTAGTGAGTTTTATAGTTATGCAGATTATACTTCTTCTTTTTAG 519 0.4489 MGFPVGYAEVFFPNLFLHTLTLLGLLRNLVFFLFHFLGLSDFLETDTVWPHNGEATQTQELSKSPSVSAVLIRELLPATKYGELAGGVEEGCCCAVCLFEFSEEEEIRCLRNCRHIFHRNCVDRWIDLDMKTCPLCRTGFVPDDMIDDYNQRLWVASGVSEFYSYADYTSSF 172
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01136 172 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Trre16g01136 172 SMART ring_2 94 136 IPR001841 -
Trre16g01136 172 SUPERFAMILY RING/U-box 93 145 - -
Trre16g01136 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 147 - -
Trre16g01136 172 Pfam Ring finger domain 94 137 IPR001841 -
Trre16g01136 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g01136 Trre-Chr16 8936022 8936540 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01136 1 159 C3H Transcription Factor Family AT1G63840 45.399 5.66e-47 149
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01136 K16281 - gmx:100500261 244.588