Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01134 ATGGCATATACCTTCATAGATGATGAAGCCTCTTCATCTTCAATCCAAAGTTCAAGTTGGACAAACCATGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCCATGGTTTCACTGATCATCTTTTTGCTTCATTAGAAAGAAGAGGTATCAAAACATTTAAGGATGATTATGACCTTAAGAGAGGAGAAAAGATATCAAATGAACTCAATAAAGCCATTGAAGAATCTATGTTTGCTATCATCATTCTCTCATCAAACTATGCTTCTTCAACATGGTGTTTAGATGAGTTACAAAAGATTGTTGAATGCAACAAAAGTTTTGGTCAAGCTGTTTTTCCAATCTTCTATGGTGTTGATCCTTCTGATGTTAGGCATCAGAGAGGAAGCTTTGATGAAGCTTTTAAGAAACATGATGAAAAATTCAGAAAAGATAGAATGAAAGTTAAAAGATGGAGAGATGCTTTAAGAGAAGTTGCTAGTTACTCTGGTTGGGACTCCAAGGGCCGGCATGAGGCATCCTTGGTGGAAACAATAGTTGAACATATTCAGAAAAAATTGATTCCAAGATTGAAGGTTAAAGATAATCTTGTTGGAATGGATTCGCGGATAAAGGAAGTATATTCGCTACTAGGAATGAGGCTAAACGACGTTCGCTTCATAGGCATATGGGGCATGGGCGGCATAGGAAAGACAACTGTTGCTAGAGAACTTTTTGAAGCGATCAAAGACGAATTCAAGGTTAGTTGCTTTCTTGCAGACATTAGAGAAACAGTTTCTAAGACAAATGGCTTAGTTCACATCCAAAGTGAACTTCTTTCGCATCTCAATATAAGAAGCAACGATTTTTATAACGTTTATGATGGCAAAAAGATATTAGCAAACTCCTTAAGAAACAAAAAAGTTCTTCTTGTTCTTGATGATGTAAGTGAATTAAGCCAATTGGAGAATTTAGCTTGGAAGCAAGAATGGTTTGGTCCAGGAAGTAGAGTAATAATCACAAGTAGAGATAAGCACTTGCTAACAACTCATGGAGTGCATAAAACTTATAAGGCTCAAGGTTTAGTGAAAAAAGAAGCACTTAAGCTATTTTGTTTGAAAGCCTTTAAACAAAATCAACCTAAAGAAGAGTATTTGAGTTTGTGTCAAGAAGTGGTTGAATATGCAAAAGGTCTTCCATTAGCACTTGAAGTATTGGGTTCACATCTTTATGGAAGAGCTGTTGAAGTTTGGCATAGTGCTTTAGAACAAATAAGAAGTGTTCCTCATTCCAAAATTCATGATACATTGAAAATAAGCTATGATAGCTTACAATCTATGGAGAAAAATATGTTTCTAGATATTGCTTGTTTCTTCAAAGGAATGGAAATAAATGCAGTAATAGAAATATTGGAAGATTGTGGTGATTTTCCCAAAATTGGAATTGACATTTTGATTGAAAGATCATTGGTAACTTTTGATAGGGGACATAATATTTTGTGGATGCATGATTTGCTTCAAGAAATGGGAAGGAATATTGTGTTGCAAGAATCTCCGAATGATCCTGGAAAACGCAGTAGGTTATGGTCTCAAAAAGACATTGATCAAGTTTTGAGAAAAAATAAGGGAACTGATAAAATTCAAGGCATATTTATGGACTTAGTTGAACCATATGAAGCAAATTGGAACATAGAAGCCATCTCCAAAATAAGTCAGCTAAGATTTCTCAAATTATGTGAAATAAAACTTCCCCTTGGCCTCAATTGTTTGCCTAGTTCACTAAAAGTTCTTGATTGGAGAGGTTGTCCTTTGAAAACCCTGCCACTCAATAATCATTTGGATGAAATTGTTGATATGAAATTGTCTCATAGCAAAATAGAACAACTTTGGCATGGAACACAGTTTCTTGAAAATCTGAAGTCCATCTACTTGAGCTTTTCGATGTCTCTAAAGCGATCGCCGGACTTTGTTGGTGTTCCAAATCTTGAATTATTGGTTCTTGATGGTTGTGCAAGCTTAACTGAGATTCATCCCTCCCTTTTAAACCACAAAAAACTTGTTCTATTGAGTTTGAAAGGTTGCAAAAGGCTCAAAACTCTTCCATGTAAAATAGAGATGAGTTCCTTGAAGGTTTTACTTCTTTCTGGTTGCTGTGAATTTAAACGTCTTCCGGAGTTCGATGAAAGCATGAAAAATTTGTCACAGCTTTATCTAGAAGAGACTGCTATAACAAAACTACCATCTTCACTTGGATTTCTTGAATCTCTTACTCTTTTGGATTTAGAAAATTGCAAGAATCTTGTTTGTCTTCCAGATACAATAAGTGAGTTGAAGTCCCTCTTAACTCTAAATGTTTCTGGATGCTCGAAAATCTGTAGTTTTCCAGAAGGTCTAAAAGAAATCAAGTCTTTGGAGGAACTCTTGGCAAATGAAACTGCTATTGAAGAACTACCTTCATCGGTTTTTTATCTCGAAAACCTCAAAGTAATATCATTTTCTGGATGCAAAGGAGTAGTTTCTAAGTCAGTGAATACATTTTTTCTACCCTTTTCACAGCTACTAGGTAGTCCACAAGAACCTACTGGATTTAGATTGCCACCTAAGTTATCTCTACCCTCTTTGGTAAAATTAAATTTAAGTTATTGCAATCTATCTGAAAATTCAATGCCAACAGATTTTTCCAACTTATCTTCCTTGATTGCTTTGAATCTCGACGGAAACAATTTTGTTAGTACACCAAGTTGCATTTCACAACTTCCAAAGCTTGAACTTCTTGGCTTAAACTGCTGTGAAATGCTTCAGACATTGCCAGAGTTTCAATCAAGTATGAGGTTATTGGATGCAACTAATTGTGGTTCATTTGAAACTTCTGAATCCAATCTATCTAGACCATGCAGTCTCTTTGCTTCGCATCCACAACGACACTCCCATTTACCAAGAGCACTGAAGAGCTATGTGGAGGCACAGGAACTTGGTCTACCTAAAGCAAGATTTGACATGCTTATCACAGGGAGTGAAATTCCATCATGGTTTACACGTTCAAAATATGTTACTTGTACACATATGTCAGTCCCTCGTGATTATCCTCCAACTGAATGGGTGGGAATTGCTTTGTGTTTCATGTTGGTAGATTTTCATGATCAACCTGAGTTGTGTGATCATGAAGTAAGTTGTTACTTGTATGGACCCAATGGTAAGTTGTTTATCAAAAGCCGGCATTTATCTCCTATGGAACCATATGTTCGTCACCTTTATATTCTCTATCTATCCATCGATGAATGTCGTGAGAGATTTTGTGAAGGTGGTGACTGCAGTCAAATTGAATTTGTCTTGAAAACTTATTGCTGTGATTCATATCAAGTTAAAGGGTGCGGTTCTCGCTTGGTATGCAAGCAAGATGTTGAAGATTTTCACAGAAATTATTACTAG 3405 0.3601 MAYTFIDDEASSSSIQSSSWTNHVFLSFRGEDTRHGFTDHLFASLERRGIKTFKDDYDLKRGEKISNELNKAIEESMFAIIILSSNYASSTWCLDELQKIVECNKSFGQAVFPIFYGVDPSDVRHQRGSFDEAFKKHDEKFRKDRMKVKRWRDALREVASYSGWDSKGRHEASLVETIVEHIQKKLIPRLKVKDNLVGMDSRIKEVYSLLGMRLNDVRFIGIWGMGGIGKTTVARELFEAIKDEFKVSCFLADIRETVSKTNGLVHIQSELLSHLNIRSNDFYNVYDGKKILANSLRNKKVLLVLDDVSELSQLENLAWKQEWFGPGSRVIITSRDKHLLTTHGVHKTYKAQGLVKKEALKLFCLKAFKQNQPKEEYLSLCQEVVEYAKGLPLALEVLGSHLYGRAVEVWHSALEQIRSVPHSKIHDTLKISYDSLQSMEKNMFLDIACFFKGMEINAVIEILEDCGDFPKIGIDILIERSLVTFDRGHNILWMHDLLQEMGRNIVLQESPNDPGKRSRLWSQKDIDQVLRKNKGTDKIQGIFMDLVEPYEANWNIEAISKISQLRFLKLCEIKLPLGLNCLPSSLKVLDWRGCPLKTLPLNNHLDEIVDMKLSHSKIEQLWHGTQFLENLKSIYLSFSMSLKRSPDFVGVPNLELLVLDGCASLTEIHPSLLNHKKLVLLSLKGCKRLKTLPCKIEMSSLKVLLLSGCCEFKRLPEFDESMKNLSQLYLEETAITKLPSSLGFLESLTLLDLENCKNLVCLPDTISELKSLLTLNVSGCSKICSFPEGLKEIKSLEELLANETAIEELPSSVFYLENLKVISFSGCKGVVSKSVNTFFLPFSQLLGSPQEPTGFRLPPKLSLPSLVKLNLSYCNLSENSMPTDFSNLSSLIALNLDGNNFVSTPSCISQLPKLELLGLNCCEMLQTLPEFQSSMRLLDATNCGSFETSESNLSRPCSLFASHPQRHSHLPRALKSYVEAQELGLPKARFDMLITGSEIPSWFTRSKYVTCTHMSVPRDYPPTEWVGIALCFMLVDFHDQPELCDHEVSCYLYGPNGKLFIKSRHLSPMEPYVRHLYILYLSIDECRERFCEGGDCSQIEFVLKTYCCDSYQVKGCGSRLVCKQDVEDFHRNYY 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01134 1134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 718 IPR044974 GO:0006952
Trre16g01134 1134 Gene3D - 353 443 IPR042197 -
Trre16g01134 1134 Gene3D - 184 349 IPR027417 -
Trre16g01134 1134 SMART LRR_typ_2 793 816 IPR003591 -
Trre16g01134 1134 SMART LRR_typ_2 651 675 IPR003591 -
Trre16g01134 1134 SMART LRR_typ_2 888 911 IPR003591 -
Trre16g01134 1134 SMART LRR_typ_2 863 887 IPR003591 -
Trre16g01134 1134 SMART LRR_typ_2 722 745 IPR003591 -
Trre16g01134 1134 Gene3D Ribonuclease Inhibitor 852 1016 IPR032675 -
Trre16g01134 1134 Pfam NB-ARC domain 214 439 IPR002182 GO:0043531
Trre16g01134 1134 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Trre16g01134 1134 FunFam Disease resistance protein (TIR-NBS-LRR class) 355 437 - -
Trre16g01134 1134 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Trre16g01134 1134 Pfam TIR domain 23 186 IPR000157 GO:0007165
Trre16g01134 1134 PRINTS Disease resistance protein signature 743 759 - -
Trre16g01134 1134 PRINTS Disease resistance protein signature 388 402 - -
Trre16g01134 1134 PRINTS Disease resistance protein signature 219 234 - -
Trre16g01134 1134 PRINTS Disease resistance protein signature 295 309 - -
Trre16g01134 1134 SMART till_3 21 161 IPR000157 GO:0007165
Trre16g01134 1134 Gene3D Ribonuclease Inhibitor 697 838 IPR032675 -
Trre16g01134 1134 Gene3D - 18 183 IPR035897 -
Trre16g01134 1134 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Trre16g01134 1134 SUPERFAMILY L domain-like 508 829 - -
Trre16g01134 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 447 IPR027417 -
Trre16g01134 1134 Gene3D Ribonuclease Inhibitor 551 696 IPR032675 -
Trre16g01134 1134 SUPERFAMILY "Winged helix" DNA-binding domain 423 530 IPR036390 -
Trre16g01134 1134 SUPERFAMILY L domain-like 761 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01134 Trre-Chr16 8920457 8925672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01134 17 824 WRKY Transcription Factor Family AT4G12020 33.978 5.12e-115 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01134 - - gmx:100815486 1536.16