Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01130 ATGGCTGCTCTTAGGTTTTCTCATGTAAAACGTCTACATAGTTCAATCAAGGGTTCTTTCAATTTCCAAAATGTTCATAATTACCACTGTAAACCTAATAGGACTTTGAATCTTGCAAGAATTTCAAGTTCTTGTATTGATTTGTCGAACCGTTGTTATTCCAATGGGGAGTTAAAATTAGATAAGATGTCTGCTCAAAACCAATTTAGCAAGTTGGGTTGTAGGGATTTCAATGCTACATTTGATTCTAGATTCTCGAGGGTATGTTTCCGAAGAAGTGTTGTTAATGTTCCTTTTACTTCGATGACTAGTGCGTTGAGTTTGCGAATGTATTCGTCGTCTTTGGGTGGAAAAGGAAGTAGTGATGGTGAAACAGAAGTGGGTACTGGTGTGAGTGATATGAATGGCGGTGGTGATTCGGTTGTTTCGGGTGATTTGGTTGAGAGGATGAAAGATACGTGGAAGAGTGTCGTAGAGGCAGCTTCATATGCTGGGGAAAAGGTTAAAGAAGGTTCCGATGGTCTTACTCCATATGCTCAACAATTTCTTGATTCACATCCTTATCTAAACATGGTGGTTGTTCCGGTTGGTGGTACTTTAACTGCTACCCTAGTAGGTTGGTTCATCTTGCCAAGGATTTTAAGGAAATTTCACAGATATGGAATGCAAAGTCCTATTTCTCTATTTCAAGGAAGCGTGTCTGAGGAGCCGGTTCCGTATGAGAAAAGCTTTTGGGGTGCTATGGAAGATCCAGTGCGATATCTAGTTACCTTCTTAGCATTCTCACAAATTGCTGTAATGGTAGCTCCAACGGCTATAGCTTCGCAATATCTTGCACCGACTTGGAGGGGTGCAATGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACGCTTTCTAGTCAAAGTGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATCTCATCTATTGGCCTATTTGTTATTGGTACAATGGCTTTGGCTGAGGCATGTGGTGTGGCTGTGCAATCTATTATAACAGTTGGTGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCTAGAGATGTACTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCTTTTTCAATTGGAGATACAATAAAAGCTGGATCGATAGAGGGTCAAGTGGTGGAAATTGGTCTCACTAGCACATCATTGTTGAGTCCAGAGAAGTTTCCAGTTATTGTGCCGAACTCGTTTTTTTCTAGCCAGGTAATTGTGAACAAGTCACGTGCCGATTATCGTGCCATTATTACCAAAATTCCTCTTCAAATCGAGGATTTAAGTAAGATTCCTCAAATATCAAATGATATAAACAACATGTTAACATCAAATGCAAAAGTGTTTTTAGGAAAAGATGTTCCCTACTGTTTCTTGTCACATATAGAAAGTTCATTTGCAGAACTCACTCTTGGATACAACCTCAAGAACATGCGCAAACATGAGTTCTACTCTGCAGAACAAGATATTCTCCTGCAAGCAGTTCAGATCATTAAGAATCACGGTGTAGCTCTTGGCAACACATGGAATGATGCTAAGTAG 1608 0.3986 MAALRFSHVKRLHSSIKGSFNFQNVHNYHCKPNRTLNLARISSSCIDLSNRCYSNGELKLDKMSAQNQFSKLGCRDFNATFDSRFSRVCFRRSVVNVPFTSMTSALSLRMYSSSLGGKGSSDGETEVGTGVSDMNGGGDSVVSGDLVERMKDTWKSVVEAASYAGEKVKEGSDGLTPYAQQFLDSHPYLNMVVVPVGGTLTATLVGWFILPRILRKFHRYGMQSPISLFQGSVSEEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAVMVAPTAIASQYLAPTWRGAMILSFVWFLHRWKTNVFARTLSSQSVLGLDREKMLALDKISSIGLFVIGTMALAEACGVAVQSIITVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEIGLTSTSLLSPEKFPVIVPNSFFSSQVIVNKSRADYRAIITKIPLQIEDLSKIPQISNDINNMLTSNAKVFLGKDVPYCFLSHIESSFAELTLGYNLKNMRKHEFYSAEQDILLQAVQIIKNHGVALGNTWNDAK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01130 535 Gene3D - 382 430 IPR023408 -
Trre16g01130 535 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 147 529 - -
Trre16g01130 535 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 281 365 IPR011014 GO:0016020
Trre16g01130 535 Gene3D - 282 381 - -
Trre16g01130 535 Pfam Mechanosensitive ion channel 324 526 IPR006685 GO:0016020|GO:0055085
Trre16g01130 535 SUPERFAMILY Sm-like ribonucleoproteins 366 431 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01130 Trre-Chr16 8899363 8903613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01130 147 534 Mechanosensitive Ion Channel Family AT4G00290 67.010 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01130 K22047 - gmx:100814954 735.717