Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01128 ATGTCTGTTGAATCAGCTGAGAATAACATCAGAGGAATACCAATTCATGGTGGACACTACTTGCAGTACAATATCTATGGTAACCTCTTTGAGGTTTCCAGAAAATATGTCCCTCCTATTCGCCCTGTCGGTAGAGGTGCTTATGGTATTGTTTGTGCTGCTGTAAATGCTGAGACACGTGAAGAAGTTGCCATTAAGAAGATTGGCAATGCATTTGACAACCGAATAGATGCTAAAAGGACCTTACGTGAAATCAAGCTTCTTCGGCATATGGATCATGAAAATGTGATGTCGATTAAAGATATTATACGACCTCCACAAAAGGAGAACTTCAATGACGTGTACATTGTTTCTGAGTTGATGGATACAGATTTGCATCAAATAATACGTTCCAATCAACCAATGACAGATGATCATTGTCGGTATTTTGTGTATCAGCTGTTACGAGGGCTCAAATATGTTCATTCAGCAAATGTTTTGCACCGGGATCTCAAGCCTAGCAATTTGCTACTGAATGCCAACTGTGACCTTAAGATTGGAGACTTTGGTCTCGCTAGAACTACATCGGAAACAGATTTCATGACTGAGTATGTGGTTACTCGGTGGTACCGAGCTCCCGAACTGCTTCTTAATTGTTCAGAATATACAGCAGCCATTGATATTTGGTCTGTTGGTTGCATACTTGGTGAAATTGTAACAAGACAACCCCTCTTTCCTGGAAGAGATTATGTTCATCAGCTGAGACTGGTCACAGAGCTGATAGGTTCACCTGATGATGCTAGCCTTGGATTCCTACGCAGCGAAAATGCTCGTAGATACGTAAGACAGCTTCCACAATATCCAAAACAGAATTTTTCTACTAGGTTTCCCAACATGTCTCCAGGTGCTGTTGATTTGCTTGAGAAGATGCTTGTCTTTGATCCGAGCAAGCGCATTAAAGTTGATGAGGCGTTGTGCCATCCATACATGGCACCTCTTCATGATATCAACGAGGAACCTGTATGTGCCAGACCTTTCAATTTTGATTTTGAAGAACCAATGTTCACTGAAGAAGATATCAAGGAACTCATCTGGAAAGAGGCTGTGAGATTCAATCCTGATCCACCAATTCACTGA 1116 0.4149 MSVESAENNIRGIPIHGGHYLQYNIYGNLFEVSRKYVPPIRPVGRGAYGIVCAAVNAETREEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNDVYIVSELMDTDLHQIIRSNQPMTDDHCRYFVYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIVTRQPLFPGRDYVHQLRLVTELIGSPDDASLGFLRSENARRYVRQLPQYPKQNFSTRFPNMSPGAVDLLEKMLVFDPSKRIKVDEALCHPYMAPLHDINEEPVCARPFNFDFEEPMFTEEDIKELIWKEAVRFNPDPPIH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01128 371 CDD STKc_TEY_MAPK 30 366 - -
Trre16g01128 371 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Trre16g01128 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Trre16g01128 371 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Trre16g01128 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 35 324 - -
Trre16g01128 371 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Trre16g01128 371 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre16g01128 371 FunFam Mitogen-activated protein kinase 22 131 - -
Trre16g01128 371 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01128 371 FunFam Mitogen-activated protein kinase 121 350 - -
Trre16g01128 371 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01128 371 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Trre16g01128 371 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01128 Trre-Chr16 8885331 8889615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01128 1 366 MAP Kinase Gene Family AT4G01370 83.871 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre16g01128 Pkinase 4.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01128 K20600 - gmx:100779469 701.819