Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01124 ATGACAGTATACAATGCTGCTTTCATCAACACACAGCTCTCAAAACCAACATCAATCTTCGGTCTCCGTCTTTGGGTCCTCATCGGAATCCTTATCGGTTCAATCATCGTCTTAACACTTTTCCTTCTCTCTCTCTGTCTCACCTCACGCCGCCGCAAAAACCACCGCAAAAACCACCACAAAACCACCAAACTCAACCACCACTCTCCTATCATCTCCAAAGAAATCCAAGAGATCACCCACGCGCCGCCTTCATCCGAGATCCACGTCGTCGACACCGTCAAACTAGAACTCCATAACCTCAACAATAACAATAACAACCACCGTGTTGTTTCAACCAGTGGAGAGAGTAGAGGAAATGGTAGTGTGAGTGAAACGGCGTCGTCTTTTGGAAGTGTGGGCCCGGAAGTTTCGCATCTTGGATGGGGAAGATGGTATACTCTTAGAGAACTTGAAGCTGCTACTAATGGTTTGTGTGAAGAAAACGTTATTGGTGAAGGTGGTTATGGAATTGTTTACAGTGGTGTTCTTCCTGATGGTGTCAAAATTGCTGTTAAGAATCTTTTGAATAACAAAGGCCAAGCTGAGAGAGAATTTAAAGTTGAGGTAGAAGTAATTGGTCGAGTACGACACAAGAATCTTGTTCGGTTGCTTGGATACTGTGTTGAGGGGGCATACAGGATGCTTGTGTATGAATATGTTGATAATGGCAATCTGGACCAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCTATGACATGGGATATCCGGATGAACATTTTATTGGGCACGGCAAAAGGATTGGCTTATCTTCACGAGGGACTTGAACCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGCCAATGGAACCCCAAGGTTTCTGATTTCGGTCTTGCTAAGCTTCTTCATTCTGATCACAGCTATGTCACGACTCGAGTCATGGGAACATTTGGTTATGTTGCACCTGAGTATGCCTGCACTGGAATGCTGACCGAGAGGAGTGACGTGTATAGCTTTGGGATACTCATCATGGAACTAATCACCGGAAGAAGTCCTGTTGATTATAGCAGACCACAAGGAGAGGTTAATTTAGTTGAGTGGTTGAAAAACATGGTTGGAAGTCGAAGAGCCGAGGAAGTAGTTGATCCTAAGCTTCCGGAGAAACCATCTTCAAAGGCTCTTAAACGTGCTTTGTTGGTTGCTCTTCGATGCGTTGATCCTGATTCCATAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAGGCTGAAGATCTCTTATGTCGTGAGGATCGAAGAACCGTGGGAGAATCTTCACATTCCCATCGTGATTATCAACGAGAGAATAAGGGTTCGAGTTTAGATAAAAATCAGATAGGTGGAGAGATCACTGATCAAAGTGATGATAGTAGTAGAAGTCACCATCAGCCAACTAGGTGGAGATGA 1470 0.4456 MTVYNAAFINTQLSKPTSIFGLRLWVLIGILIGSIIVLTLFLLSLCLTSRRRKNHRKNHHKTTKLNHHSPIISKEIQEITHAPPSSEIHVVDTVKLELHNLNNNNNNHRVVSTSGESRGNGSVSETASSFGSVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYSGVLPDGVKIAVKNLLNNKGQAEREFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDQWLHGDVGPVSPMTWDIRMNILLGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNPKVSDFGLAKLLHSDHSYVTTRVMGTFGYVAPEYACTGMLTERSDVYSFGILIMELITGRSPVDYSRPQGEVNLVEWLKNMVGSRRAEEVVDPKLPEKPSSKALKRALLVALRCVDPDSIKRPKMGHVIHMLEAEDLLCREDRRTVGESSHSHRDYQRENKGSSLDKNQIGGEITDQSDDSSRSHHQPTRWR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01124 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Trre16g01124 489 MobiDBLite consensus disorder prediction 475 489 - -
Trre16g01124 489 PANTHER OS01G0323000 PROTEIN 7 456 - -
Trre16g01124 489 MobiDBLite consensus disorder prediction 441 489 - -
Trre16g01124 489 SUPERFAMILY Protein kinase-like (PK-like) 134 430 IPR011009 -
Trre16g01124 489 MobiDBLite consensus disorder prediction 441 459 - -
Trre16g01124 489 ProSiteProfiles Protein kinase domain profile. 158 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01124 489 MobiDBLite consensus disorder prediction 460 474 - -
Trre16g01124 489 FunFam Putative receptor-like serine/threonine-protein kinase 234 444 - -
Trre16g01124 489 Gene3D Phosphorylase Kinase; domain 1 139 233 - -
Trre16g01124 489 FunFam Probable serine/threonine-protein kinase At1g01540 138 233 - -
Trre16g01124 489 Pfam Protein kinase domain 161 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01124 489 CDD STKc_IRAK 164 430 - -
Trre16g01124 489 Gene3D Transferase(Phosphotransferase) domain 1 234 444 - -
Trre16g01124 489 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524
Trre16g01124 489 SMART serkin_6 158 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01124 Trre-Chr16 8856070 8859203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01124 115 447 Trihelix Transcription Factor Family AT1G70460 46.018 1.52e-92 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre16g01124 Pkinase 9.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01124 - - gmx:100777348 725.702