Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01121 ATGGTATCAGTGAACCCTAATCCAGCACAAGGTTTCCATTTCTTCGATCCTTCAAACATGGGTCTTCCTGGTGTCAACAATCTTCCGCCGCCACCGCCGCCACCGCCGCAACATACTAGCGCCGCCAATTCCGAGGATCCGAATAAGAAGATCCGAAAACCCTACACGATTACCAAATCTAGAGAGAGTTGGACTGATCAGGAGCATGAGAAGTTTCTAGAAGCTCTTCAATTATTCGATCGTGATTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAGTGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCCAAAAATGCTCCTACTGCATCCCAAGTCATGGGGCCATTGCAATCTTCACCTGCTTTTGTTGACCCAGCATACATTTATAGCACAGATTCATCATCTGTGCTTGGAACACCAGTTACTAGTCTGCCTTTATCATCTTGGAATCATAATGCTGCACCACCAGCCAGTGTGCCACAAGTGACTACAGATGACACGGGATGGACTGGATCTGGACAAGCTGTTCCTCTTAATTGTTGCTATAGCAGCAGTAACGAGAGCGCTCGCGCAGCTGGGCCAAGTAGTAATGGGATCAATCAAGGCAACGTGGGCAAGCCAGTTAAAGTCATGCCAGATTTTGCACAAGTATACAACTTCATTGGCAGTGTATTTGATCCAAATTCAACTAATCACCTACAGAGACTAAAGCAGATGGACCCCATAAATGTTGAAACGGCACTGTTGTTGATGAGAAACCTCTCCATTAATTTAACTAGTCCTGAATTTGAGGATCATAAGAAGCTACTGTCATCATATGATCCTGATTGTGAGAAGGCAAAGTTTGCTAATCCAAGTAGCAAATCCGTGACTGTGAAATCTGAAAATGCTGTTCTGTCTGCTTAG 1005 0.4448 MVSVNPNPAQGFHFFDPSNMGLPGVNNLPPPPPPPPQHTSAANSEDPNKKIRKPYTITKSRESWTDQEHEKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNAPTASQVMGPLQSSPAFVDPAYIYSTDSSSVLGTPVTSLPLSSWNHNAAPPASVPQVTTDDTGWTGSGQAVPLNCCYSSSNESARAAGPSSNGINQGNVGKPVKVMPDFAQVYNFIGSVFDPNSTNHLQRLKQMDPINVETALLLMRNLSINLTSPEFEDHKKLLSSYDPDCEKAKFANPSSKSVTVKSENAVLSA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01121 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Trre16g01121 334 MobiDBLite consensus disorder prediction 45 66 - -
Trre16g01121 334 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Trre16g01121 334 SMART sant 60 108 IPR001005 -
Trre16g01121 334 MobiDBLite consensus disorder prediction 1 66 - -
Trre16g01121 334 PANTHER SWI/SNF COMPLEX-RELATED 37 292 - -
Trre16g01121 334 MobiDBLite consensus disorder prediction 111 145 - -
Trre16g01121 334 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Trre16g01121 334 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Trre16g01121 334 CDD SANT 63 106 IPR001005 -
Trre16g01121 334 Gene3D - 64 111 - -
Trre16g01121 334 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Trre16g01121 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Trre16g01121 334 MobiDBLite consensus disorder prediction 24 40 - -
Trre16g01121 334 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01121 Trre-Chr16 8842743 8848257 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g01121 Myb_DNA-binding 5.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01121 - - gmx:778090 511.531