Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01116 ATGACAACTGGTCATGTTCATTGTCGATCAGGAGGAAGTCTGGTGAACATGAAGACCATGAACATGGAAACGACAACAGTGCGTGTTGAAAATGATATGAAAGTTGACACTGTTATTAGTTTTCATTGTCGCTCATCAGGAATCGATCTCGGAGAAAAAACACTTCACAGTGGTCAATATGTGGAGTGGTCTTTTCATGCCGAATCTAGTGGCACTACTCTCTATTCATGTGTCTTAAAATGGAACAATTTACAAAAAAATATTATAATTTATGATGCCACAAAAGATGAAGCGACATGCACATCTAAATGTTGGCGTAGTATTAGTCCAGATGGAGTCTATTTTTTTCACGAGTTTAAAAATTCATGGGAAAAACGATATACATGGAATTAA 393 0.3639 MTTGHVHCRSGGSLVNMKTMNMETTTVRVENDMKVDTVISFHCRSSGIDLGEKTLHSGQYVEWSFHAESSGTTLYSCVLKWNNLQKNIIIYDATKDEATCTSKCWRSISPDGVYFFHEFKNSWEKRYTWN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01116 130 PANTHER - 24 118 IPR010264 -
Trre16g01116 130 Pfam Plant self-incompatibility protein S1 26 129 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01116 Trre-Chr16 8800106 8800498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01116 25 130 Carbohydrate Esterase AT3G16970 25.688 2.72e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01116 - - cam:101510822 150.984