Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01115 ATGGTAGCAGATAGCGGCGATTTCGCTGGCACCATTTGTTCAATTTGTTACGAAGGTCTCAACCCCATTACCGAAGATCTTCAATCAGTTTCCATCTGCGGTCATGTCTTTCACGAACTCTGTTTGCAGCAATGGTTCGAGTATTGTGCGACGAAGAAGCATACTTGCCCCGTTTGCAAGCAAGGTTGCAAGGCGAAAGACGCGTGTCGGCTTTATTTTCAATCGATTGGAGATATGAAGGAATCTGTTGTTACACAGAAGCAAGTTGGTGTTGAAGAAGATGCCGGTGTTTTGCGAAAAGAAGTTAAGAGATTGGAGGGTAAAGTTTCTGGGCTTAGTACTGTTTTGGAAAAACACACTAAGGAGTTAGATGAAGTTAAAGATGAGCTTTGTACTTGCAAGGAACAGATGAAGATAGAAATTGCATCAAAGAATGAAGCCTTGAAGCTAAAAACATCCTTACAATTCCAGCTTCGTGTGAAATCAGAGGAGCTTGAGAAGTCAAATTTGGAGCGTTTTAGATTGCAAGAGAGAAACATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTGGTGTCTGATCTGGACCTTGGTGAAGATGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTCAAGAAACTGTAGACACATTAAAAAGATCTCTTGTCCTGCGGAACAGGAGTTACAAAGAGTTAATGGCAAAGTGTAATGTTCTGGGGAGAGGTGAGGCTCATTATCGTAAAAAGCTTGAGAAGGCTAAAGAGAAGATTACTAAAACGAAGGCAAGGCTACAAGAAATGGCGGCAACAATGGAAGCAAAAGAGAACGAATATTTGAAGCAACTAAAAGTTGCCAAGAACACTGAAAATAGAATCAATTCAAATTCTGATGTGTTAACGGCTAACAAAGTTTCTTCAAAAGAGCAAAACAAACAAAGTACAACACCAAAGTATGGAATGGATCTGAATAAGAAAGACAACAACAAAACTTTACAATCTTTGAAGACAGAGAACTCCAAAGCTACAAAAAATAAGGATGTGAATATTAGTAATGTGAGTAAACCTACCTTGTCTCGCAATGAAGAGATAGAGTGTATCATTATCGATGAAGATGACTACAATGATTGTGACAAGGTTGATCTAGGAATGCCAGAAACGGCACCTAGTACAAAGACTAAAACATCATTGCAAGGAATATGCAATTTGGCAGAGTCTTCAAGAATTGATATCGATACCGAAACGGCTGACATTACTGCTGACACTATGGATGAAGATGTGATACTACAAGCCAATGCTAAACAACCTGAACCAATGGTTAACATTAGAAAGGAGTCACCATTAGCAACTTCAAGTCCAGTGGATATATGCTTTTCTGGTGGATTGTTTGGTCCTGATGGAACTCAAAGATACTTGGGTAAATGGTGCAAGCGTGGACAAAATGGTGAATCAACATCCACAAAAGGGAATTTGATATCTGTAGGAGCTGATGGTAGAGGTGGCAAAGTCAAAGTTCTAAGGTCTCCTAGCCAAGCTTTCTCGGATGGTAAGGAAAATTCAACATCTTCAAAAAGGTTGAAGCTTGGACCTAACAAAGCAAGTAGTTTACAGCAATCCAGGGGGTGTCTGCAGATTGAACACTTTTTTGGGAGGGTAGGTCAGTAA 1671 0.4016 MVADSGDFAGTICSICYEGLNPITEDLQSVSICGHVFHELCLQQWFEYCATKKHTCPVCKQGCKAKDACRLYFQSIGDMKESVVTQKQVGVEEDAGVLRKEVKRLEGKVSGLSTVLEKHTKELDEVKDELCTCKEQMKIEIASKNEALKLKTSLQFQLRVKSEELEKSNLERFRLQERNMALAKELAALKLVSDLDLGEDEVLKLATLGNGANSQETVDTLKRSLVLRNRSYKELMAKCNVLGRGEAHYRKKLEKAKEKITKTKARLQEMAATMEAKENEYLKQLKVAKNTENRINSNSDVLTANKVSSKEQNKQSTTPKYGMDLNKKDNNKTLQSLKTENSKATKNKDVNISNVSKPTLSRNEEIECIIIDEDDYNDCDKVDLGMPETAPSTKTKTSLQGICNLAESSRIDIDTETADITADTMDEDVILQANAKQPEPMVNIRKESPLATSSPVDICFSGGLFGPDGTQRYLGKWCKRGQNGESTSTKGNLISVGADGRGGKVKVLRSPSQAFSDGKENSTSSKRLKLGPNKASSLQQSRGCLQIEHFFGRVGQ 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01115 556 Coils Coil 109 129 - -
Trre16g01115 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 62 IPR013083 -
Trre16g01115 556 Pfam Ring finger domain 12 60 IPR001841 -
Trre16g01115 556 Coils Coil 327 347 - -
Trre16g01115 556 SUPERFAMILY RING/U-box 12 65 - -
Trre16g01115 556 MobiDBLite consensus disorder prediction 296 324 - -
Trre16g01115 556 MobiDBLite consensus disorder prediction 511 537 - -
Trre16g01115 556 MobiDBLite consensus disorder prediction 514 537 - -
Trre16g01115 556 SMART ringv_2 12 60 IPR011016 GO:0008270
Trre16g01115 556 MobiDBLite consensus disorder prediction 296 344 - -
Trre16g01115 556 CDD RING-H2 13 60 - -
Trre16g01115 556 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 555 - -
Trre16g01115 556 SMART ring_2 13 59 IPR001841 -
Trre16g01115 556 Coils Coil 246 294 - -
Trre16g01115 556 ProSiteProfiles Zinc finger RING-type profile. 13 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01115 Trre-Chr16 8789917 8796802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01115 2 556 C3H Transcription Factor Family AT4G01270 43.058 7.40e-128 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01115 K11985 - gmx:100812811 675.241