Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01104 ATGTCTTCCTCAAACCCTTTCTCTCCACCACCACCACCACCACTTCCTTACCTCACCAATCTCGGCTTCGGTTACTCCATAGCCATAGCTCTCGGTTTTCTCTTCCTTCTTTCAACGTTAATCCTCTCTTCTTATCTCTGTTGTCGCACTTTCCGTAACCGTCATAATAACAATAACAACCGTCGCAACAACAACCATCAATCTAATGACGACGGCGTTGTTTTACCTCGTGTGATTTTTGTAGCAGAAGAAGATGAAGATCGAGAAGATGTTGTTTTAGGTTTGGATCAGAATGTGATCAATTCGTATCCGAGGTTACAATATGGGAAAGATTTAGGACATGACAGTACTTGTTCGATCTGTTTATGTGAGTATAAGGATTCTGAGATGTTAAGGATGATGCCGGAATGTAGACACTATTTTCATCTTTGTTGTCTTGATTCTTGGTTGAAACTTAACGGTTCTTGTCCCGTTTGTCGGAATTCTCCTATGCCTACGCCGTTATCTACGCCGTTACAAGAAGTTGTTCCTCTTTCTCATTACATTGGTGAAAGAAGGGTAAGAAGGTGA 570 0.4158 MSSSNPFSPPPPPPLPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRHNNNNNRRNNNHQSNDDGVVLPRVIFVAEEDEDREDVVLGLDQNVINSYPRLQYGKDLGHDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRVRR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01104 189 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Trre16g01104 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 165 IPR013083 -
Trre16g01104 189 PANTHER RING-H2 FINGER PROTEIN ATL67 7 187 IPR044289 GO:0016567|GO:0016740
Trre16g01104 189 SMART ring_2 118 159 IPR001841 -
Trre16g01104 189 SUPERFAMILY RING/U-box 104 165 - -
Trre16g01104 189 Pfam Ring finger domain 117 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01104 Trre-Chr16 8735707 8736276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01104 5 187 C3H Transcription Factor Family AT2G35910 41.146 3.29e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01104 - - vra:106773185 263.462