Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01099 ATGAACATTTTTCCTACCATACTCATTATTGCTAACATACTATTTTTCTTCTCCAAAATTTCTTCTGCAAAAGATACCATTACACAATCACAACCACTTCCCGATGGAAGCACCTTGGTTTCTAAGGATGGAATATTTGAGTTAGGTTTCTTCAATCTAGGTGATTCCACAAACCGCTATGTTGGAATTTGGTACAAAAATACTGATAGAAGAGTTGTTTGGGTTGCTAATCGTGACAATCCAATCAAAGACAATTCTAGCAAGTTAATCATAAGTCGAAATGGAAACCTTGTGCTTCTAAATCAAAATCAAACTCTTCTATGGTCAACAAAGACAACAACAACAACAACAAAAACAAAGGTTGCAATTTCAAGTCCAATTGTGCAACTTTTGGACAATGGAAATTTAGTACTTAAAAATGAGAACCAAGACAACACTGATGAAAATTTTCTATGGCAGAGTTTTGATTATCCTTGTGATACAGTATTACCAGGAATGAAAGTGGGATGGGACAAAAAAAAGGGTTTTGATAGATATCTCATTGCATGGAAAAATTGGGATGATCCATCTTCAAGTGATTTTACTTCAGCTTTAGTTCAAACTCCTAATCCTGAAAGTTTTATTTGGAAAGGCTCAACAAAACTCTACAGAACAGGACCATGGACTGGTTCTCGATCAAGTGGAATAGTTGGATTAACAACAAATCCACTTTATGATTATGAGTTTATCAACAATGAAGATGAATTGTATTATATGTTCACACTCAAGAATAGTTCTTATATTTCTATAGTTGTTTTGAACCAAACAAGTTCCAATCGACAACGTCTCATTTGGGTTTCAGATTCCAAAAAATGGAATAATTACCTAACATTACCACAAGATACTTGTGATGATTATAATATTTGTGGAAATAATGGCCTTTGTACGCTCAATGAATCACCTATTTGTCAGTGTTTAGATGGATTTAAGCCGAAGTCGCCGCAACAGTGGAATGCAACGGATTGGAGACAAGGATGTGAGCGTAATGGCAATTGGAGTTGTAGGGTTAAACATAGAGATGGGTTTAAAAGAATTGTTGGGATGAAATTGCCAGATACTACACATTCTTGGATTGATGAGAAAATGTCACTTAAAGATTGCAAGGATAAATGTTTGAAGAATTGTTCTTGTAGTGCTTACTCAAGTTTAGAATCAACTGGAACAGGTAAAGGTTGTTCAATCTGGTTTGGTGATCTTATTGATCTTAGAGTTTCAGCAAGTGGACAAGATCTATATATTCGAACAGACTCGCCAAATATAGGTGATAAAAATGGGCAAATAAAAAAAATCGTATTGGCAGTTTCAATTCCAATTTCAGTAGTCCTTGTGATGTTATTGGCATTCACCTACATACATATAACAAAGGCAAAGTATAAAAAAAAAACCACAAGGTCAGAAGAGAAAGAAGATAAATACGAAGATTTTGAGCTTCCTATCTTTGATCAAGCTACAATACTCAAGGCAACAAATAACTTCTCTTTTGACAACAAGCTCGGTGAAGGTGGTTTTGGACCGGTATATAAGGGTACATTGCTTGATGGACAAGAAATTGCTGTCAAAAGGCTTTCGAGGAGTTCTGGTCAAGGACTTAAAGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTTAAAGTTATTGGTTGTTGTATTGAAGGTGGGGAGAAAATGTTGGTCTATGAATACATGTCCAACAAAAGTCTAGATTCATTTCTTTTTGATCCATTTCAAAGTAAATTGTTAGATTGGTCCGCACGCTTTAACATTCTATTTGGAATTGCTCGGGGCCTTCTTTATCTCCATGTAGATTCAAGATTACGAATCATACACAGAGATATGAAAGTGAGTAATATTTTATTGGATGATGATATGAATCCCAAAATTTCTGATTTTGGCATGGCTAGAATGTGTGGAGGTGATCAGATTGAGGGGAGAACAGACAAAATAGTAGGCACATACGGCTATATGGCACCAGAATATGCCTTTGATGGATTGTTCTCTATTAAATCAGATGTATTTAGCTTTGGTGTATTATTGTTAGAAATTATATGTGGAAAGAAAAATAGAGCACATAGCTATCTGGAGCACGATCATAATCTTATTGGATATGCATGGAGGTTGTGGAAAGAAGGCAGGCCACTTAATTTGATCGATGATAATTTGAGCAATTCATGTATTGAATCTGAAGTTGTACGTTGCATTCAAATTGGTCTACTATGCCTACAACATCATCCCGATGATAGACCAAACATGACATCTGTGGTTGTGATGCTGAGTAGCGAAAATACATTACCAAAACCAAAGGAACCTGGTTTCTTAATTAAAAAGTTCCCAGTTGATGGAGAATCTTCTTCAACAAATGAAATAACTATTTCACTAATAGACGCTAGATAG 2448 0.3509 MNIFPTILIIANILFFFSKISSAKDTITQSQPLPDGSTLVSKDGIFELGFFNLGDSTNRYVGIWYKNTDRRVVWVANRDNPIKDNSSKLIISRNGNLVLLNQNQTLLWSTKTTTTTTKTKVAISSPIVQLLDNGNLVLKNENQDNTDENFLWQSFDYPCDTVLPGMKVGWDKKKGFDRYLIAWKNWDDPSSSDFTSALVQTPNPESFIWKGSTKLYRTGPWTGSRSSGIVGLTTNPLYDYEFINNEDELYYMFTLKNSSYISIVVLNQTSSNRQRLIWVSDSKKWNNYLTLPQDTCDDYNICGNNGLCTLNESPICQCLDGFKPKSPQQWNATDWRQGCERNGNWSCRVKHRDGFKRIVGMKLPDTTHSWIDEKMSLKDCKDKCLKNCSCSAYSSLESTGTGKGCSIWFGDLIDLRVSASGQDLYIRTDSPNIGDKNGQIKKIVLAVSIPISVVLVMLLAFTYIHITKAKYKKKTTRSEEKEDKYEDFELPIFDQATILKATNNFSFDNKLGEGGFGPVYKGTLLDGQEIAVKRLSRSSGQGLKEFKNEVILCAKLQHRNLVKVIGCCIEGGEKMLVYEYMSNKSLDSFLFDPFQSKLLDWSARFNILFGIARGLLYLHVDSRLRIIHRDMKVSNILLDDDMNPKISDFGMARMCGGDQIEGRTDKIVGTYGYMAPEYAFDGLFSIKSDVFSFGVLLLEIICGKKNRAHSYLEHDHNLIGYAWRLWKEGRPLNLIDDNLSNSCIESEVVRCIQIGLLCLQHHPDDRPNMTSVVVMLSSENTLPKPKEPGFLIKKFPVDGESSSTNEITISLIDAR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01099 815 Gene3D Hepatocyte Growth Factor 346 425 - -
Trre16g01099 815 Pfam Domain of unknown function (DUF3403) 777 815 IPR021820 GO:0004674
Trre16g01099 815 Pfam Protein tyrosine and serine/threonine kinase 506 775 IPR001245 GO:0004672|GO:0006468
Trre16g01099 815 ProSiteProfiles PAN/Apple domain profile. 347 429 IPR003609 -
Trre16g01099 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 767 - -
Trre16g01099 815 SMART blect_4 30 158 IPR001480 -
Trre16g01099 815 CDD STKc_IRAK 511 776 - -
Trre16g01099 815 Pfam PAN-like domain 347 415 IPR003609 -
Trre16g01099 815 Gene3D Transferase(Phosphotransferase) domain 1 581 786 - -
Trre16g01099 815 Gene3D Phosphorylase Kinase; domain 1 464 580 - -
Trre16g01099 815 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Trre16g01099 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 155 - -
Trre16g01099 815 Pfam D-mannose binding lectin 72 184 IPR001480 -
Trre16g01099 815 SMART ntp_6 350 428 IPR003609 -
Trre16g01099 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Trre16g01099 815 CDD B_lectin 30 158 IPR001480 -
Trre16g01099 815 PIRSF SRK 1 815 IPR024171 GO:0004674
Trre16g01099 815 SUPERFAMILY Protein kinase-like (PK-like) 487 776 IPR011009 -
Trre16g01099 815 Gene3D - 18 155 IPR036426 -
Trre16g01099 815 ProSiteProfiles Protein kinase domain profile. 505 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01099 815 ProSiteProfiles Bulb-type lectin domain profile. 24 151 IPR001480 -
Trre16g01099 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 470 580 - -
Trre16g01099 815 CDD PAN_AP_plant 339 428 - -
Trre16g01099 815 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Trre16g01099 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 581 784 - -
Trre16g01099 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 189 IPR036426 -
Trre16g01099 815 SMART serkin_6 505 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01099 Trre-Chr16 8722049 8725697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01099 430 793 Receptor kinase-like Gene Family AT4G23230 53.005 1.89e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01099 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01099 - - tpra:123915292 1293.49