Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01091 ATGGATTACGAACCAGAATTTCTCTATCCAATTAGTAAGAAGGATATGGAAACCGTCAAGTACTACTTCGACAACGAAACAGAATTCATGCCCGCAAGAAACTTCTTCACAAATGATCTCAACATTCTCTACCGCATGCATGCCGTTTCAGTAATCGCTAAGGTCACAAAGAAGGATGATCCAGATGCTTATGTTTCGTATCTTGCTATGAACTACTTTGATCGCTTCATATGCCGTTGCGACATGAGGCGTGTCGAAGGTCAGACTGATACCGAAAAAGTTCGTTTGATTGCTATATCTTGTTTCACCTTATCTGCCAAGATGAGGACAGAGTCATTCTCAGTTGAACATTTTCTGTTTGACCTAGATAGGGACATGAATCTGAACATAACTCAACACAGTGTAATGAGAATGGAGGGTCTCATTAAAAAAAAACTTGATTGGAAAATGAAATCTGTAACTGCCTTCTGTTTTCTGAACCACTATTATGCTTACTTCAAACCACTCGGTGGTTTTAAACGTCGTAGCATTAATGAGATCATAGTTCAAGCTCAAGGATTGCACACCTTCGTTGATTTCATGCCTTCGGAAATTGCGCTCTCCGCTTTTGCTGCTGCTGCTTCAATTGCATATCCCAAAAATAGGATTGCAAAAGACATTAAAAGAATGATGAGCCCTAAAGTGAAGGAATGTATAACGATTATGGTAATTCTTTGCGATACCATGAACATCCAGATTGATACCTCTAGATCATCTGAAGATGTAGAAGAAGAAGATGGGACTGCATTAATCGACAAGCGAAGACAGGACATGGGCAAGACGGAGACTTCTCAATTGCAGATGAAGGTGAAGCTGGAGGAGTTATTTGATAAAAAAGATGCAGCAGCAGAAGAGATTGATGCAGAAAAACGAAGTCTGGCCAAGTGTAAGGGCAAAGGCAAGGCAGTGGAAAAGGTTAAGCAGCCACAGCCACAGGTGGAGGGATACATTTCAGAGATTGAACCAAAGAAGTTTATGAACTTTGAGCTGAAATGGGAAACTGATGTTCCATCACTAGAAGTAGGAATAGGACACCCGCCGCCACCAGAGTCTACAGGTATAAGCCTTAAGATACCAGGGACTGGAATTAATATAAATTTAGGCTGTTGTACCTGCAACATCCTTTAG 1167 0.4096 MDYEPEFLYPISKKDMETVKYYFDNETEFMPARNFFTNDLNILYRMHAVSVIAKVTKKDDPDAYVSYLAMNYFDRFICRCDMRRVEGQTDTEKVRLIAISCFTLSAKMRTESFSVEHFLFDLDRDMNLNITQHSVMRMEGLIKKKLDWKMKSVTAFCFLNHYYAYFKPLGGFKRRSINEIIVQAQGLHTFVDFMPSEIALSAFAAAASIAYPKNRIAKDIKRMMSPKVKECITIMVILCDTMNIQIDTSRSSEDVEEEDGTALIDKRRQDMGKTETSQLQMKVKLEELFDKKDAAAEEIDAEKRSLAKCKGKGKAVEKVKQPQPQVEGYISEIEPKKFMNFELKWETDVPSLEVGIGHPPPPESTGISLKIPGTGININLGCCTCNIL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01091 388 SUPERFAMILY Cyclin-like 15 150 IPR036915 -
Trre16g01091 388 Coils Coil 285 305 - -
Trre16g01091 388 Gene3D - 24 224 - -
Trre16g01091 388 PANTHER CYCLINS 17 251 IPR039361 -
Trre16g01091 388 Gene3D - 32 151 - -
Trre16g01091 388 Pfam Cyclin, N-terminal domain 19 150 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01091 Trre-Chr16 8655168 8657164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01091 17 208 Core Cell Cycle Gene Families AT1G70210 29.500 4.00e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01091 - K18812 tpra:123896490 384.03