LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g01080	ATGCCGAAGAACAAAGGAAAAGGAGGAAAGAATCGGAAGAGAGGAAAGAATGAAGCCGACGACGATAAACGCGAGCTCGTTTTCAAAGAAGATGGTCAAGAATACGCTCAGGTTCTCCGAATGCTCGGTAATGGTCGTTGCGAAGCACATTGCTTCGACGAAGATGGTGGAAAAAAACGTCTCTGTCATATTCGTGGTAAGATGCATAAAAAAGTTTGGATCGCCGCCGGTGATATTATTCTTGTTGGACTTCGTGATTATCAGGATGATAAATCTGATGTTATTTTGAAATATATGCCTGATGAAGCTAGGCTTCTTAAAGCTTATGGTGAACTTCCTGAACATATTAGATTTAATGAAGGGGTTGTTCTTGATGAAGATGAGGATGATACTAATAATTACATTGAGTTTGAGGATGAAGATATTGATAAGATTTAA	438	0.3881	MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAHCFDEDGGKKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKSDVILKYMPDEARLLKAYGELPEHIRFNEGVVLDEDEDDTNNYIEFEDEDIDKI	145

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g01080	145	Gene3D	-	2	145	IPR012340	-
	Trre16g01080	145	NCBIfam	translation initiation factor eIF-1A	14	113	IPR001253	GO:0003743\|GO:0006413
	Trre16g01080	145	CDD	S1_IF1A	33	112	IPR001253	GO:0003743\|GO:0006413
	Trre16g01080	145	Pfam	Translation initiation factor 1A / IF-1	32	96	IPR006196	GO:0003723\|GO:0003743\|GO:0006413
	Trre16g01080	145	PANTHER	EIF-1A	1	145	IPR001253	GO:0003743\|GO:0006413
	Trre16g01080	145	MobiDBLite	consensus disorder prediction	1	25	-	-
	Trre16g01080	145	ProSiteProfiles	S1 domain IF1 type profile.	22	99	IPR006196	GO:0003723\|GO:0003743\|GO:0006413
	Trre16g01080	145	SUPERFAMILY	Nucleic acid-binding proteins	2	140	IPR012340	-
	Trre16g01080	145	Hamap	Translation initiation factor 1A [eif1a].	16	113	IPR001253	GO:0003743\|GO:0006413
	Trre16g01080	145	SMART	eIF1neu4	28	113	IPR001253	GO:0003743\|GO:0006413

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g01080	Trre-Chr16	8555621	8556058	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g01080	1	145	Eukaryotic Initiation Factors Gene Family	AT2G04520	81.081	4.43e-81	233

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g01080	K03236		-	jre:109019055	243.047