Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01052 ATGTGCAGTTTCTATTTCTTCTTCATCTTCTCCATCATCTTCTTCTTCTTTTCACCATTAACATTATCTTTGGAACCAAGAAGGTTCCTTCATCAACCTTTTGAATCTCCAAACTCACTCTCACCTTCTCAATCTCCAAACCCATCTCCACCATCATCACCAAATCCAAAACTACCATTTTCCACAACTACCCCTAACACTTCTTCTTCTTCTTCATCATCATCAAATACACCCCCTTTTTTCCCAACATACCCTTCACCCCCACCGCCACCTTCACCTTCTTCTTTCGCTTCATTCCCTGCTAACATATCTTCTCTTATTCTTCCTCAATCCTCTAAACCCAAATCTTCTTCTTCCAAACTCCTCGCCGTCGCCATTACCGCCGTTATCGCCGCCGTGGTTGTTGCTTCCATTTCAGCTTTCATTTACTGTCGCAGAAAAAGAAAAAGCTTCTCTAATGATGATAAAACACTCAGATCCGATAGTAGTATTCGTCTTTTTCCACGGGAAGGTGGTGGCGCAACCGGCGCCGCCACCGTGAAGTCGAGGAATGTTTCTTCTACTAGCTCAGAGTTTCTTTATCTTGGTACCATTGCTAACTCTCGTGGTGATGATCTATCTAATGGTGGCGGTGGTGGTGTTGGTGGTCGGAATCCTAGAAAAATGGACTCGCCGGAGCTTCAACCGTTACCGCCACTTGCGCGACAAGGTTCGTTATCGCGGTTTTACGATGCAGGTGTGAATGTTGGTGAAGATGAAGAAGAAGAGTTTTATTCACCGAGAGGTTCTTTGAACGGAATTGGATCGGGTTCACGGAGAGTTTTCGCCGGAATTTCAGCTGAGAATTTGGTGGGTCGAAGTAGTAGTGAATCTACTTCATCTTCTTCTTATTCATCTTCTTCTGCTTCACCGGATCGTTCTCATTCGATTAGTCTTTCGCCACCGGTTAGTTTAAGTCCAAGAAGATCACAGTCAAAGTCGCCGGAAAATGTACAAACACCGCCACCGACACAGCCATTACTTGGCACCGACGGTGGAAGAAGCTCTTTGTCTTCATCAACAGTTTCTTCTCCACGAGCTTCTTCAAACTTGAACGTGAAGTCTTCTTGTTCAATGTCTTCTACGCCGGAGAAAATCTTCGCCGGAGAATGTCAATCACCGTCTTTATCACCTTTGAATCTTTCACCGACGAAAAACTTAGATGGGTCTTTTGTTAAAGTTGAAAAGACTCAATCTTGTAATGAAGATGGTTCTTCTCCGAGATTATCTAATGCTTCTAGTGGTAAATCTTCTTCTTCAGCGTTTACTTTACCGTCGCCGGAGAAAATGACAATGATGCAAGATCATAGCAATCATGGTTTGGATCAATCTCCAACTATTTCAGATGTTTCAGATCGGTTTAGACATTCTCCTTTGTCATCATTACCTCTTTCCCCGACGCTTTTATCATCGCCGGAGAGAGAGATGAACACAATGAACATGATGAACACGATGAATATGATGAACACTCAACCACCACCACCGCCGCCGCCACCACCTACTAGGAAGCATTGGGAGATTCCTGACCTTTTAACACCAATTGTTGAATCACCAACTGTTTTGATTCAACAAGGTGTTGTTTCTCAAAGAAAACAATGGGAAATTCCGGTTCTTTCAACACCAATTGCACCTTCTATTAGTGTTTCAGCAGCTCCTCCACCGCCGCCTCCACCACCACCGGCAATGCCGATGAGGCAAAGGAAGCAATGGGAAGTACCTTCTCCAACAACTCCTGTCGGTCAACCGGTTGTTTCTAGGCCACCGGAATTGAAACCTCCTTCAGGGCCTTTTGTGTTGCAAACCCCTCCAAATACATTGGTTTCTCCTGTTGAATTGCCACCAAGTTTTGAGGAGAATGCTGAAGAGGTTTCTAAACCAAAGTTGAAACCTTTGCATTGGGATAAAGTGAGGGCTAGTTCCGATCGTGAAATGGTTTGGGATCATTTGAGATCCAGCTCATTTAAGTTGAATGAGGAAATGATAGAAACATTGTTTGTGGTGAACACACCAAATCCAAAACCAAAAGATGCTACGCCACGTTCCGTTCTTACACCTCAACATCATGAGGATAGGGTATTGGATCCTAAAAAGTCACAAAATATTGCTATCTTGCTTCGAGCGGTTAATGTTACGGTAGAGGAAGTGTGTGAAGCATTGTTAGAAGGTGTTACTGATACACTTGGAACCGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAATTGAAGGAACATAAAGACGACTCTCCAAACAAACTCGGTCATGCTGAGAAATTTTTGAAGGCAGTTCTCGATGTACCTTTCGCATTTAAAAGGGTGGAAGCTATGCTTTACATAGCCAATTTTGAGTCTGAAGTGGAGTATCTTCGTAAATCGTTTCAAACTCTAGAGGTTGCATGTGAAGAGCTACGAAACAGTAGAATGTTCTTGAAGCTTCTAGAAGCTGTGCTCAAAACTGGAAACCGCATGAACGTTGGAACAAACCGAGGTGATGCACATGCATTCAAGCTCGATACACTTCTCAAGCTGGTTGATGTCAAAGGTGCAGACGGAAAAACAACTCTTTTACACTTTGTTGTACAAGAAATCATTAGAACCGAAGGAGCTCGTCATTCGGACACTACTACTAATCAAACACCGGCAACAATATTGAGTGACGACGCCAAGTGTAGAAGACTCGGCCTTCAAGTAGTATCTAGTCTAAGTTCCGATCTAGCCAATGTGAAGAAAGCCGCAGCAATGGACTCCGAAGTTCTCACAAGCGAAGTCTCTAAACTATCAAAAGGAATCACACACATTGCCGAGATCGTGAAATTGAATCAAACAGCAGGATCAGACGAAACCGTTAAAAAATTCACAGAATCAATGAACAAGTTCATGAGAATGGCTGAGGAGGAGATTGTTAGAATTCAAGCACAAGAAAGTGTTGCTTTATCACTTGTGAAGGAGATCACAGAGTATTTTCATGGAAACTTGTCTAAAGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTTTTAACAGTTCTTGATAGAGTATGCAGAGAAGTTGGTAATATAAATGAAAAGACCATGATTAGTTCAGCTCATAGATTTCCAGTTCCAGTGAACCCTATGCTTCCACAACCACTTCCCGGATTACATGGACGGAGAAATTACAGCTCCTCAGACGACGATAGTTCGTCTCCTTAG 3258 0.4291 MCSFYFFFIFSIIFFFFSPLTLSLEPRRFLHQPFESPNSLSPSQSPNPSPPSSPNPKLPFSTTTPNTSSSSSSSSNTPPFFPTYPSPPPPPSPSSFASFPANISSLILPQSSKPKSSSSKLLAVAITAVIAAVVVASISAFIYCRRKRKSFSNDDKTLRSDSSIRLFPREGGGATGAATVKSRNVSSTSSEFLYLGTIANSRGDDLSNGGGGGVGGRNPRKMDSPELQPLPPLARQGSLSRFYDAGVNVGEDEEEEFYSPRGSLNGIGSGSRRVFAGISAENLVGRSSSESTSSSSYSSSSASPDRSHSISLSPPVSLSPRRSQSKSPENVQTPPPTQPLLGTDGGRSSLSSSTVSSPRASSNLNVKSSCSMSSTPEKIFAGECQSPSLSPLNLSPTKNLDGSFVKVEKTQSCNEDGSSPRLSNASSGKSSSSAFTLPSPEKMTMMQDHSNHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPEREMNTMNMMNTMNMMNTQPPPPPPPPPTRKHWEIPDLLTPIVESPTVLIQQGVVSQRKQWEIPVLSTPIAPSISVSAAPPPPPPPPPAMPMRQRKQWEVPSPTTPVGQPVVSRPPELKPPSGPFVLQTPPNTLVSPVELPPSFEENAEEVSKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNPKPKDATPRSVLTPQHHEDRVLDPKKSQNIAILLRAVNVTVEEVCEALLEGVTDTLGTELLESLLKMAPSKEEERKLKEHKDDSPNKLGHAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYLRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTTTNQTPATILSDDAKCRRLGLQVVSSLSSDLANVKKAAAMDSEVLTSEVSKLSKGITHIAEIVKLNQTAGSDETVKKFTESMNKFMRMAEEEIVRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCREVGNINEKTMISSAHRFPVPVNPMLPQPLPGLHGRRNYSSSDDDSSSP 1085
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01052 1085 ProSiteProfiles Formin homology-2 (FH2) domain profile. 631 1058 IPR015425 -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 43 58 - -
Trre16g01052 1085 SMART it6_source 631 1047 IPR015425 -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 285 372 - -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 1062 1085 - -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 561 595 - -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 59 79 - -
Trre16g01052 1085 Gene3D Formin, FH2 domain 628 1042 IPR042201 -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 35 93 - -
Trre16g01052 1085 PANTHER FORMIN-RELATED 373 1079 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre16g01052 1085 Pfam Formin Homology 2 Domain 636 1032 IPR015425 -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 409 486 - -
Trre16g01052 1085 SUPERFAMILY Formin homology 2 domain (FH2 domain) 565 1045 - -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 561 577 - -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 204 238 - -
Trre16g01052 1085 MobiDBLite consensus disorder prediction 681 705 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g01052 Trre-Chr16 8399798 8404035 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01052 76 338 FH2 protein (formin) Gene Family AT3G25500 44.803 3.54e-26 114
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01052 - - gmx:100802678 1205.66