LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g01052	ATGTGCAGTTTCTATTTCTTCTTCATCTTCTCCATCATCTTCTTCTTCTTTTCACCATTAACATTATCTTTGGAACCAAGAAGGTTCCTTCATCAACCTTTTGAATCTCCAAACTCACTCTCACCTTCTCAATCTCCAAACCCATCTCCACCATCATCACCAAATCCAAAACTACCATTTTCCACAACTACCCCTAACACTTCTTCTTCTTCTTCATCATCATCAAATACACCCCCTTTTTTCCCAACATACCCTTCACCCCCACCGCCACCTTCACCTTCTTCTTTCGCTTCATTCCCTGCTAACATATCTTCTCTTATTCTTCCTCAATCCTCTAAACCCAAATCTTCTTCTTCCAAACTCCTCGCCGTCGCCATTACCGCCGTTATCGCCGCCGTGGTTGTTGCTTCCATTTCAGCTTTCATTTACTGTCGCAGAAAAAGAAAAAGCTTCTCTAATGATGATAAAACACTCAGATCCGATAGTAGTATTCGTCTTTTTCCACGGGAAGGTGGTGGCGCAACCGGCGCCGCCACCGTGAAGTCGAGGAATGTTTCTTCTACTAGCTCAGAGTTTCTTTATCTTGGTACCATTGCTAACTCTCGTGGTGATGATCTATCTAATGGTGGCGGTGGTGGTGTTGGTGGTCGGAATCCTAGAAAAATGGACTCGCCGGAGCTTCAACCGTTACCGCCACTTGCGCGACAAGGTTCGTTATCGCGGTTTTACGATGCAGGTGTGAATGTTGGTGAAGATGAAGAAGAAGAGTTTTATTCACCGAGAGGTTCTTTGAACGGAATTGGATCGGGTTCACGGAGAGTTTTCGCCGGAATTTCAGCTGAGAATTTGGTGGGTCGAAGTAGTAGTGAATCTACTTCATCTTCTTCTTATTCATCTTCTTCTGCTTCACCGGATCGTTCTCATTCGATTAGTCTTTCGCCACCGGTTAGTTTAAGTCCAAGAAGATCACAGTCAAAGTCGCCGGAAAATGTACAAACACCGCCACCGACACAGCCATTACTTGGCACCGACGGTGGAAGAAGCTCTTTGTCTTCATCAACAGTTTCTTCTCCACGAGCTTCTTCAAACTTGAACGTGAAGTCTTCTTGTTCAATGTCTTCTACGCCGGAGAAAATCTTCGCCGGAGAATGTCAATCACCGTCTTTATCACCTTTGAATCTTTCACCGACGAAAAACTTAGATGGGTCTTTTGTTAAAGTTGAAAAGACTCAATCTTGTAATGAAGATGGTTCTTCTCCGAGATTATCTAATGCTTCTAGTGGTAAATCTTCTTCTTCAGCGTTTACTTTACCGTCGCCGGAGAAAATGACAATGATGCAAGATCATAGCAATCATGGTTTGGATCAATCTCCAACTATTTCAGATGTTTCAGATCGGTTTAGACATTCTCCTTTGTCATCATTACCTCTTTCCCCGACGCTTTTATCATCGCCGGAGAGAGAGATGAACACAATGAACATGATGAACACGATGAATATGATGAACACTCAACCACCACCACCGCCGCCGCCACCACCTACTAGGAAGCATTGGGAGATTCCTGACCTTTTAACACCAATTGTTGAATCACCAACTGTTTTGATTCAACAAGGTGTTGTTTCTCAAAGAAAACAATGGGAAATTCCGGTTCTTTCAACACCAATTGCACCTTCTATTAGTGTTTCAGCAGCTCCTCCACCGCCGCCTCCACCACCACCGGCAATGCCGATGAGGCAAAGGAAGCAATGGGAAGTACCTTCTCCAACAACTCCTGTCGGTCAACCGGTTGTTTCTAGGCCACCGGAATTGAAACCTCCTTCAGGGCCTTTTGTGTTGCAAACCCCTCCAAATACATTGGTTTCTCCTGTTGAATTGCCACCAAGTTTTGAGGAGAATGCTGAAGAGGTTTCTAAACCAAAGTTGAAACCTTTGCATTGGGATAAAGTGAGGGCTAGTTCCGATCGTGAAATGGTTTGGGATCATTTGAGATCCAGCTCATTTAAGTTGAATGAGGAAATGATAGAAACATTGTTTGTGGTGAACACACCAAATCCAAAACCAAAAGATGCTACGCCACGTTCCGTTCTTACACCTCAACATCATGAGGATAGGGTATTGGATCCTAAAAAGTCACAAAATATTGCTATCTTGCTTCGAGCGGTTAATGTTACGGTAGAGGAAGTGTGTGAAGCATTGTTAGAAGGTGTTACTGATACACTTGGAACCGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAATTGAAGGAACATAAAGACGACTCTCCAAACAAACTCGGTCATGCTGAGAAATTTTTGAAGGCAGTTCTCGATGTACCTTTCGCATTTAAAAGGGTGGAAGCTATGCTTTACATAGCCAATTTTGAGTCTGAAGTGGAGTATCTTCGTAAATCGTTTCAAACTCTAGAGGTTGCATGTGAAGAGCTACGAAACAGTAGAATGTTCTTGAAGCTTCTAGAAGCTGTGCTCAAAACTGGAAACCGCATGAACGTTGGAACAAACCGAGGTGATGCACATGCATTCAAGCTCGATACACTTCTCAAGCTGGTTGATGTCAAAGGTGCAGACGGAAAAACAACTCTTTTACACTTTGTTGTACAAGAAATCATTAGAACCGAAGGAGCTCGTCATTCGGACACTACTACTAATCAAACACCGGCAACAATATTGAGTGACGACGCCAAGTGTAGAAGACTCGGCCTTCAAGTAGTATCTAGTCTAAGTTCCGATCTAGCCAATGTGAAGAAAGCCGCAGCAATGGACTCCGAAGTTCTCACAAGCGAAGTCTCTAAACTATCAAAAGGAATCACACACATTGCCGAGATCGTGAAATTGAATCAAACAGCAGGATCAGACGAAACCGTTAAAAAATTCACAGAATCAATGAACAAGTTCATGAGAATGGCTGAGGAGGAGATTGTTAGAATTCAAGCACAAGAAAGTGTTGCTTTATCACTTGTGAAGGAGATCACAGAGTATTTTCATGGAAACTTGTCTAAAGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTTTTAACAGTTCTTGATAGAGTATGCAGAGAAGTTGGTAATATAAATGAAAAGACCATGATTAGTTCAGCTCATAGATTTCCAGTTCCAGTGAACCCTATGCTTCCACAACCACTTCCCGGATTACATGGACGGAGAAATTACAGCTCCTCAGACGACGATAGTTCGTCTCCTTAG	3258	0.4291	MCSFYFFFIFSIIFFFFSPLTLSLEPRRFLHQPFESPNSLSPSQSPNPSPPSSPNPKLPFSTTTPNTSSSSSSSSNTPPFFPTYPSPPPPPSPSSFASFPANISSLILPQSSKPKSSSSKLLAVAITAVIAAVVVASISAFIYCRRKRKSFSNDDKTLRSDSSIRLFPREGGGATGAATVKSRNVSSTSSEFLYLGTIANSRGDDLSNGGGGGVGGRNPRKMDSPELQPLPPLARQGSLSRFYDAGVNVGEDEEEEFYSPRGSLNGIGSGSRRVFAGISAENLVGRSSSESTSSSSYSSSSASPDRSHSISLSPPVSLSPRRSQSKSPENVQTPPPTQPLLGTDGGRSSLSSSTVSSPRASSNLNVKSSCSMSSTPEKIFAGECQSPSLSPLNLSPTKNLDGSFVKVEKTQSCNEDGSSPRLSNASSGKSSSSAFTLPSPEKMTMMQDHSNHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPEREMNTMNMMNTMNMMNTQPPPPPPPPPTRKHWEIPDLLTPIVESPTVLIQQGVVSQRKQWEIPVLSTPIAPSISVSAAPPPPPPPPPAMPMRQRKQWEVPSPTTPVGQPVVSRPPELKPPSGPFVLQTPPNTLVSPVELPPSFEENAEEVSKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNPKPKDATPRSVLTPQHHEDRVLDPKKSQNIAILLRAVNVTVEEVCEALLEGVTDTLGTELLESLLKMAPSKEEERKLKEHKDDSPNKLGHAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYLRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTTTNQTPATILSDDAKCRRLGLQVVSSLSSDLANVKKAAAMDSEVLTSEVSKLSKGITHIAEIVKLNQTAGSDETVKKFTESMNKFMRMAEEEIVRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCREVGNINEKTMISSAHRFPVPVNPMLPQPLPGLHGRRNYSSSDDDSSSP	1085

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g01052	1085	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	631	1058	IPR015425	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	43	58	-	-
	Trre16g01052	1085	SMART	it6_source	631	1047	IPR015425	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	285	372	-	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	1062	1085	-	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	561	595	-	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	59	79	-	-
	Trre16g01052	1085	Gene3D	Formin, FH2 domain	628	1042	IPR042201	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	35	93	-	-
	Trre16g01052	1085	PANTHER	FORMIN-RELATED	373	1079	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Trre16g01052	1085	Pfam	Formin Homology 2 Domain	636	1032	IPR015425	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	409	486	-	-
	Trre16g01052	1085	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	565	1045	-	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	561	577	-	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	204	238	-	-
	Trre16g01052	1085	MobiDBLite	consensus disorder prediction	681	705	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g01052	Trre-Chr16	8399798	8404035	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g01052	76	338	FH2 protein (formin) Gene Family	AT3G25500	44.803	3.54e-26	114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g01052	-		-	gmx:100802678	1205.66