Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01038 ATGGGAGAAAATATTAATTGTGAAGAAATTGGACTCATTGGTGAACTAATGCAAGGAGAGGAGCTAGCAAAGAAGCTTTGTGATAAACTCTTTCCATCATCATCACCATCATCATCAACATCATCATCATCATCACAATCACAATCACATGTAGCTAATGAAGTATTACTTGACAAAATAGTTTTGTCTATTGAGAAAGCATTAACAATGTTGAAGGGTAATGTTGGAAAAATTAAGACAAACAATGTTAACTTGATGGATTCTCATTGTTCAAATGGAAGTCCCAAAAGTGAGGTCCAAGATTCAGTCTTCAAGCACAAACATGTCTCAAAGAAAAGAAAAACCATGCCTAAGTGGACAGAACAAGTTAAGGTGTATTTAGAATCAGCACCTGAAGGGTCTGTGGAGGATGGTTATAGCTGGAGAAAGTATGGACAAAAGGATATCCATGGAGCCAAGTTTCCAAGGGGATATTATAGATGCACACATAGAAATTCACAAGGTTGTCTAGCTACTAAACAAGTGCAAAAATCAGAAGAAGATTCAATGGTATATGAGATAACCTACAAAGGAAGACACACATGCACCCAATCTAGTAATTTGAACAAGGCAAACCCATCAAAAAAATTGAAATTTGGACAAAATAAATCACAAGCCAATCAAAAAGTTCAACCACAAGAAGAGAAAATTCAACCACCTCAAGAGAAAACTTTTTCTTCTCACAACAAAGAGGAAATATTCCCATCATTCAATTTTTCCTCTCCAACAATAGGATCTGAAAATGAAGATAACAACATGTTTTTAGAGTCCATGATTAAAAACAATTTCATGGAAAATGAGAACAATGATATATTCTCAGAATCAAATAATTTCTGCTTGTCACTATTGGATTTGGACAGCATTGAACTAAGCCCAAGTGATGAGCCTGATATTATGGAGATGATTTCAGGCCCAAATTCAGTTGTCAATTCCCCAATAGATTTTGATTTATTTAATGATATAAATTCTGACATGGATTTCTCTATAAGAGAGTTTATGTGA 1041 0.3439 MGENINCEEIGLIGELMQGEELAKKLCDKLFPSSSPSSSTSSSSSQSQSHVANEVLLDKIVLSIEKALTMLKGNVGKIKTNNVNLMDSHCSNGSPKSEVQDSVFKHKHVSKKRKTMPKWTEQVKVYLESAPEGSVEDGYSWRKYGQKDIHGAKFPRGYYRCTHRNSQGCLATKQVQKSEEDSMVYEITYKGRHTCTQSSNLNKANPSKKLKFGQNKSQANQKVQPQEEKIQPPQEKTFSSHNKEEIFPSFNFSSPTIGSENEDNNMFLESMIKNNFMENENNDIFSESNNFCLSLLDLDSIELSPSDEPDIMEMISGPNSVVNSPIDFDLFNDINSDMDFSIREFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01038 346 SMART WRKY_cls 135 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g01038 346 Gene3D WRKY domain 121 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g01038 346 Pfam WRKY DNA -binding domain 136 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g01038 346 MobiDBLite consensus disorder prediction 196 240 - -
Trre16g01038 346 SUPERFAMILY WRKY DNA-binding domain 134 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g01038 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 12 320 IPR044810 GO:0003700
Trre16g01038 346 ProSiteProfiles WRKY domain profile. 130 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g01038 346 FunFam WRKY transcription factor 53 121 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01038 Trre-Chr16 8282608 8285061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01038 5 209 WRKY Transcription Factor Family AT4G23810 41.202 1.21e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g01038 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01038 - - psat:127076062 435.647