Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01020 ATGAGCCCTGCTGTCCAGACTGTGGCGGCCGACAACAACGGCGGGTTCCGGTCACACAAGAAGAAGAATAAGAAGAAGAATGTTAATACTGCTTCTTCATTGGGGAAAAGAAAAGGTGCTGATGATTTCAGAAAGGAAAAACCTAATAAGAAGTCAAACAAAAGGTCTCAGTTGAGTAGTGATAATGATGATGATAGTGATGATAATAAAGTTGTAGCAGTAGAAAATGGTGGTGCTGATGGTGGTTCTGGAATTGTTGGAGGAGATTCTTATTTAAGTGATTCCAGATTTGACCAGTGTTCAGTCTCTCCACTGTCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACCATTGTTCAGGAGGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACAGGAACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTTGTGAAGTCTCCACCAAGTGATCGTAATCAAATGCGTAAACCAATTCTTGTTCTTATCATATGCCCAACGCGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACTAAACTGCTCAAGTATCATCCTACCATTGGTGCTCAAGTTGTGATTGGAGGAACAAATCTTAGTGTAGAACAGAAGCGAATTCAAAAAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCACATTGATAGTACTGCTGGTTTTCCTTCTAGGCTTATGGGGGTTAAGACCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGATAAAATAATTGCTGCAGTTCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGATGCGGTGCATCAAGTCTGTAAAATTGCTTTGAAAAAGGATTTTGAATTTATCAATACAGTTCAGGAGGGTACTGAGGAGACACATGCAAAGGTCCGCCAGATGCATTTAATTGCCCCGCTAGACAAACATTTCTCTTTACTCTATGCTATTCTGAAGGAGCACATTGCCGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGGTCTCCTTGGGAAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCTGATGAATTCCGGAGGTCAAAGCGTCTCATCCTAGTCACTTCGGATGTATCCGCACGTGGAGTTGATTATCCAGATGTTTCTCTTGTTGTACAGGTTGGCCTACCATCTGATAAACAACAGTACATACATCGACTGGGTAGAACGGGGCGAAAAGGAAAAGAAGGGCAAGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGATTCTGCAAAAGATTTGCCTATTGGGAAAGCTCCAGTACCTTCTGTTGATCCTGAGACTAGGAAAAAGGTGGATAGGGCTATATCCAATGTCGCGATGGATGATAAAGAAAGAGCATATCAAGCATGGCTTGGTTACTACAATTCCAACAAGAAAGTGGGGAAAGATAAGCGTAAGTTGGTGGAGCTTGCTAACGAGTTCAGTCGAAGCATGGGGCTTGATACCCCTCCAGCTGTTGCTATGCTTATCCTTCGCAAGATGGGTCTTCAAAATGCCCCTGGTTTACGTTCCAAATAG 1692 0.4238 MSPAVQTVAADNNGGFRSHKKKNKKKNVNTASSLGKRKGADDFRKEKPNKKSNKRSQLSSDNDDDSDDNKVVAVENGGADGGSGIVGGDSYLSDSRFDQCSVSPLSLKGIKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEAVVKSPPSDRNQMRKPILVLIICPTRELACQAAAEATKLLKYHPTIGAQVVIGGTNLSVEQKRIQKNPCQILVATPGRLRDHIDSTAGFPSRLMGVKTLVLDEADHLLDMGFRKDIDKIIAAVPKQRQTLMFSATIPDAVHQVCKIALKKDFEFINTVQEGTEETHAKVRQMHLIAPLDKHFSLLYAILKEHIADDVDYKVLVFCTTAMVTRLVAGLLGKLNLNVREIHSRKPQSYRTRVSDEFRRSKRLILVTSDVSARGVDYPDVSLVVQVGLPSDKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLDSAKDLPIGKAPVPSVDPETRKKVDRAISNVAMDDKERAYQAWLGYYNSNKKVGKDKRKLVELANEFSRSMGLDTPPAVAMLILRKMGLQNAPGLRSK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01020 563 Gene3D - 47 310 IPR027417 -
Trre16g01020 563 Pfam Helicase conserved C-terminal domain 340 448 IPR001650 -
Trre16g01020 563 Pfam DEAD/DEAH box helicase 121 297 IPR011545 GO:0003676|GO:0005524
Trre16g01020 563 SMART ultradead3 114 327 IPR014001 -
Trre16g01020 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 463 IPR027417 -
Trre16g01020 563 Gene3D - 318 543 IPR027417 -
Trre16g01020 563 CDD DEADc_MSS116 102 311 - -
Trre16g01020 563 PANTHER RNA HELICASE 33 497 - -
Trre16g01020 563 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 489 IPR001650 -
Trre16g01020 563 MobiDBLite consensus disorder prediction 1 85 - -
Trre16g01020 563 SMART helicmild6 367 448 IPR001650 -
Trre16g01020 563 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 95 123 IPR014014 GO:0003724
Trre16g01020 563 CDD SF2_C_DEAD 324 457 - -
Trre16g01020 563 MobiDBLite consensus disorder prediction 37 71 - -
Trre16g01020 563 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 309 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01020 Trre-Chr16 8139115 8144723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01020 95 476 Eukaryotic Initiation Factors Gene Family AT3G19760 27.877 5.61e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01020 - - gmx:100799999 803.512