Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01019 ATGCCCACAAAAATCTTCTTATCACAACTCCGTCTTCTTCATTTCCAACCAATGAAACTTCACTCTCCTCAATTTCTTTCTCAATCTCTCTTCAAATTCTCTCATCTTCCACTCCGAAACGCTGCGTTTCGTCCTTTCTCCGTTAAACCAGATAGAATTAGGGTTTCTAAAAGCCTCGTCGATGACGAGGCTGAGCTTAGTAATTGGGTCGACGATTTGCGAACTGGTAGAGCTGAGACCGTGAAACCTGCTCGAAGAGTGGGTTCTGGTCGTGAAACGGGTGATAGAGACGGTGGGTTTCGGCCACGGAAGAGTAGTGCTAGTAGAAGTTCTAATTTTGCGAAGAGAAAACCTTATTTGAATTCGAATACAAAGAGAAGATTTGGTTTGAGTAGTGATAATGATGATGATGACAAGGAGGTGGTTGAAAGAGGGAAGTTTAAGGGTGGTGGTGGTTCTGGAAGTATTGGTGAATTTCTTAGTGAAGATGATTTTGAAGGAGAATCAGAGAGTGATGATAATGATGATGAGGAGGTAGTTAACAAAAGTAGAAGTGTTTTGTTTGGCAAACAAAATGGGGTGTCAACAACTCCTAGACCTTCTTCACCCGGTGGAAGTGATTCTTATTTAAGTGATTCTAGATTCGATCAATGTTCAGTTTCACCATTATCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACACTTCCAGTAATTCTACAAGGTAAGGATGTCCTGGCCAAGGCTAAAACCGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCAGCCATTGAAGTTGTTGTGAAGTCTCCACCAGCTGATCGTGATCAAAGGCGGCCACCAATTTTTGTTCTTGTCATATGTCCTACTCGAGAGCTTGCATGTCAAGCTGCTGCCGAAGCCACTAAACTGCTCAAGTATCATCCTACCTTAGGTGTTCAAGTTGTGATCGGAGGAACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACCCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCATCTAGACTTATGGGGGTGAAAGCCTTGGTGCTTGATGAAGCTGATCATTTACTGGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAATTCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGACGAGGTGCGTCAAGTCTGTCATGTTGCTTTGAAAAGGGATTTTGAATATATTAATACAGTTCAAGAGGGTTCTGAGGATACACATGCACAGGTCCACCAAATGCATTTAGTTGCACCATTAGACAGGCATTTCCCTTTACTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACAGCTATGGTCACAAGACTTGTTGCTGATCTCCTTGGGGAGTTGAACTTGAATGTGAGGGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCTGACGAATTCCGGAAGTCAAAGGGTCTCATCCTGGTTACCTCGGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTTGGCCTACCGGCTGATAGAGAACAGTATATACATCGACTAGGTAGAACAGGGAGAAGAGGAAAAGAAGGGCAGGGCATACTGCTATTAGCTCCTTGGGAAGAGTTCTTTTTAGCTACCGCAAAAGATTTGCCTATTGGGAAAGCTCCAGTACCTTCAGTTGATCCTGACACCAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTAGAAATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAACTCTAACAAGAAAGTGGGGAAAGATAAGTATAGGTTAGTCGAGCTTGCAAATGAGTTCAGTCGATGCATGGGGCTCGATACCCCTCCAGCCATTCCTAAGCTTGTCCTCGGCAAGATGGGTCTTAAAAATGTCCCTGGTTTACGTTCCAAATAG 2046 0.4291 MPTKIFLSQLRLLHFQPMKLHSPQFLSQSLFKFSHLPLRNAAFRPFSVKPDRIRVSKSLVDDEAELSNWVDDLRTGRAETVKPARRVGSGRETGDRDGGFRPRKSSASRSSNFAKRKPYLNSNTKRRFGLSSDNDDDDKEVVERGKFKGGGGSGSIGEFLSEDDFEGESESDDNDDEEVVNKSRSVLFGKQNGVSTTPRPSSPGGSDSYLSDSRFDQCSVSPLSLKGIKDAGYEKMTVVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVVVKSPPADRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHVALKRDFEYINTVQEGSEDTHAQVHQMHLVAPLDRHFPLLYAILKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLATAKDLPIGKAPVPSVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRCMGLDTPPAIPKLVLGKMGLKNVPGLRSK 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01019 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 462 612 IPR001650 -
Trre16g01019 681 SMART helicmild6 485 566 IPR001650 -
Trre16g01019 681 MobiDBLite consensus disorder prediction 80 103 - -
Trre16g01019 681 CDD DEADc_MSS116 220 429 - -
Trre16g01019 681 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 213 241 IPR014014 GO:0003724
Trre16g01019 681 Pfam DEAD/DEAH box helicase 238 415 IPR011545 GO:0003676|GO:0005524
Trre16g01019 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 244 427 IPR014001 -
Trre16g01019 681 Pfam Helicase conserved C-terminal domain 461 566 IPR001650 -
Trre16g01019 681 Gene3D - 437 659 IPR027417 -
Trre16g01019 681 CDD SF2_C_DEAD 442 575 - -
Trre16g01019 681 MobiDBLite consensus disorder prediction 104 128 - -
Trre16g01019 681 MobiDBLite consensus disorder prediction 129 146 - -
Trre16g01019 681 MobiDBLite consensus disorder prediction 80 210 - -
Trre16g01019 681 SMART ultradead3 232 445 IPR014001 -
Trre16g01019 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 581 IPR027417 -
Trre16g01019 681 Gene3D - 178 428 IPR027417 -
Trre16g01019 681 PANTHER RNA HELICASE 177 610 - -
Trre16g01019 681 MobiDBLite consensus disorder prediction 185 210 - -
Trre16g01019 681 MobiDBLite consensus disorder prediction 161 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01019 Trre-Chr16 8133139 8138275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01019 213 594 Eukaryotic Initiation Factors Gene Family AT3G19760 26.884 5.21e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01019 - - gmx:100795739 959.518