Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01015 ATGACTAAAATAAAAAGGAAGATCCCATCCAAGTTGATTGAGGATGTTCCTACAAGAGAAACAACCTATAATTATAGATTAAAAGGGTTGTTCAAAAAAATGGAGCAAGTGAAAACCCTGTGTGGTCTTGAGGCATGTGCACTTGTACTTGGTCCAGGTGATACAAAACCTTCAATATGGCCATCTGAAGATATAGCCAAAGATCTGATAAATAAGTTCGAATCATTCTCAAGTTCTGTTCAATCGAAAAATAGGACTGACCAATTGATTTTTTTGAAGGACAAAGAGAAAAAACTTGAATCAAACCTTGCAAAGATCAACAAAGGTAATGAAGAGATATTAATGGGATTTTTCATGAAGCAAATTATAAATGAAGGTAAGTCTTTTAATGATTTTGATATTAATCAGAAGAATTGCTTGATTAGTTTTATGCTTGAAAAAATTAAGATTGCTAGAAAAGGACTTAGGTGTGCAGTGTTGTCTCTTAATAATCTTCCTCCTCCACCACCAATGTCTTGTTCTTTAGACAATGGCAACATGATAGATTTGGGGATAAACCAAGTTGATCACATGGGTGGTAGTGGTGTTGATAACAATTCAATCAACAATATAGGGCTAATTCCAATTTCAAATCTTAGTGGAAGTGATGATTTGTTGGTTCATCAAGGCAATTTAGGTAGTGGCAAGGAGATATCACCACAAGTGAATTCTAGTGGTGGTGTGGAAGTGGCATTTTCTTATGAAGATTTGGGAGACTTCAATTGTAACATGGAGATACCATCATATGAAAATAGTATTAGTTATAGTATTGATGATATGTTTCTTTCTCAAGAAAATTTAGGAGGCTTTGATAACAATATAGGTGGCAACATGGGAATAGCACCACATGCAAATCCTAGTGGTGTAGATTTGTTGCCTCCTCAAGACAATTTTGAAGGTAACATAAACAATCAAGATATTGGTAACAACTTAGGTAACAACATAAGGATATCACCACATGAAAATTCTAGAGATGGTATTAATATGTTGTTTCCTCAAGAAAATTTTGGAGATCAATGTGATATCCAAAGTTATAACAATAACATGTGGCTACCATCTCATGCAAATCCTAGTGGTCACATTGATTCATTTCTTTCTCAAGGAAATTATGGTGGTCAAGGAAACCTTGGATGTTTTGATAATAATGCAAGTAGCAACATGTGGATACCACCACAATATGAAAATCCTAGTGGTGGTAATAATATGATGATTCATCATCAAAACAACTTTCAAGGCAATACTAATGGAGAAGGCACTGAGATTTTCAATGCAAACTTTGATCATACAAACTATGGAAGTAATTTCATTCATGAATGGTCTTCTAAAGAAAATGTTTCCGGCAACAATGAGCAACAACAACATTAA 1404 0.3412 MTKIKRKIPSKLIEDVPTRETTYNYRLKGLFKKMEQVKTLCGLEACALVLGPGDTKPSIWPSEDIAKDLINKFESFSSSVQSKNRTDQLIFLKDKEKKLESNLAKINKGNEEILMGFFMKQIINEGKSFNDFDINQKNCLISFMLEKIKIARKGLRCAVLSLNNLPPPPPMSCSLDNGNMIDLGINQVDHMGGSGVDNNSINNIGLIPISNLSGSDDLLVHQGNLGSGKEISPQVNSSGGVEVAFSYEDLGDFNCNMEIPSYENSISYSIDDMFLSQENLGGFDNNIGGNMGIAPHANPSGVDLLPPQDNFEGNINNQDIGNNLGNNIRISPHENSRDGINMLFPQENFGDQCDIQSYNNNMWLPSHANPSGHIDSFLSQGNYGGQGNLGCFDNNASSNMWIPPQYENPSGGNNMMIHHQNNFQGNTNGEGTEIFNANFDHTNYGSNFIHEWSSKENVSGNNEQQQH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01015 467 SUPERFAMILY SRF-like 5 97 IPR036879 GO:0003677|GO:0046983
Trre16g01015 467 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Trre16g01015 467 Gene3D - 15 99 IPR036879 GO:0003677|GO:0046983
Trre16g01015 467 Coils Coil 92 112 - -
Trre16g01015 467 CDD MADS_SRF_like 5 87 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre16g01015 467 ProSiteProfiles MADS-box domain profile. 3 51 IPR002100 GO:0003677|GO:0046983
Trre16g01015 467 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01015 Trre-Chr16 8100101 8101504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01015 4 110 Type I MADS-box Gene Family AT1G65300 37.383 8.37e-19 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g01015 SRF-TF 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01015 - - mtr:25491525 364.385