Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01014 ATGAGTCCAAAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAGTCAGAGTCATCATCTTTTAATTTTTCACAATATGATTCTTCAATTGATGGATTTGAAAAAAGAAAATCAAAATCAAGTGTTACTCTTACTCCTACAAAAAATAATGAATCATTGAACAAACAAGCTCCTAGGTGTAGTGTTCTTGATCCACAAGCAATGAGATACTTAAGCTCTCATTTCATCATTGACATTCTGTCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCTATGATTCCAATTCCACAATGCTCAGTTCCTTATATAGCAAAGGATTGGTTGAAGTATACAATAATAACACAGTATGCGCCGAGACTTCTGCGAATCTATCCTTTGTTTAAAGAAGTAACAAGCACTTCTGGTATATTAACCGAGACAGCATGGGTTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCTTTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGATGTTGGCGCAGACGATTGAAGAATACTGCATTCTTCGATGATTCCTATTTGAGCTGTGGACGAGTCAATTCGACACTTTTTTCGATTCTCAACAATTCTACTACTTGTCCTTACAGAGATCCTGATGCTATCATTGATCCAACAGTTTTCAATTTTGGAATATTTATTGATGCGCTAACGTCGCGTGTGGTAGAATTGAATACAAGCTTTCATCATAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGGCAGAATCTGAAGACAAGCACTTATATAGGGGAGATAATCTTTGCTATCTTCATCGCCGTCTTTGGATTGGTCCTATTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGAGTACTTGAAAGAAAGAATTCGACGTTATGAACAATACAAATGGCAAGAAAATAGAGGTGTCGAAGAGGAGAATTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCGATTTTCGGGAGCATGGATGAAAAATTGTTGGATGCAATGTGTGATAAACTGAAACCAGTCCTATATACCGAGAAAAGTTGCGTTGTTCGTGAAGAAAACAACTTCAACACACTTTCAGGTTCTATTCGTTGCAATGGAGGACATGGGGAGCGCGGTTCATACAAGTAG 1302 0.3748 MSPKEKKFVRFEDWKSESSSFNFSQYDSSIDGFEKRKSKSSVTLTPTKNNESLNKQAPRCSVLDPQAMRYLSSHFIIDILSILPLPQMVILAMIPIPQCSVPYIAKDWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWVGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRRLKNTAFFDDSYLSCGRVNSTLFSILNNSTTCPYRDPDAIIDPTVFNFGIFIDALTSRVVELNTSFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPEYLKERIRRYEQYKWQENRGVEEENLIRNLPKDLRRDIKRHLCLDLLKKVPIFGSMDEKLLDAMCDKLKPVLYTEKSCVVREENNFNTLSGSIRCNGGHGERGSYK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01014 433 Gene3D - 59 303 - -
Trre16g01014 433 FunFam Cyclic nucleotide-gated ion channel 1 306 370 - -
Trre16g01014 433 SUPERFAMILY Voltage-gated potassium channels 65 301 - -
Trre16g01014 433 SUPERFAMILY cAMP-binding domain-like 308 414 IPR018490 -
Trre16g01014 433 Gene3D Jelly Rolls 367 428 IPR014710 -
Trre16g01014 433 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 413 - -
Trre16g01014 433 Pfam Ion transport protein 67 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre16g01014 433 Gene3D Helix hairpin bin 306 366 - -
Trre16g01014 433 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01014 Trre-Chr16 8090596 8094130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01014 67 409 Ion Channels AT1G01340 66.764 6.26e-164 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01014 K05391 - gmx:100795201 573.163