Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01013 ATGAGTCCAAAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAGTCAGAGTCATCATCTTTTAATTTTTCACAATATGATTCTTCAATTGATGGATTTGAAAAAAGAAAATCAAAATCAAGTGTTACTCTTACTCCTACAAAAAATAATGAATCATTGAACAAACAAGCTCCTAGGTGTAGTGTTCTTGATCCACAAGCAATGAGATACTTAAGCTCTCATTTCATCATTGACATTCTGTCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCTATGATTCCAATTCCACAATGCTCAGTTCCTTATATAGCAAAGGATTGGTTGAAGTATACAATAATAACACAGTATGCGCCGAGACTTCTGCGAATCTATCCTTTGTTTAAAGAAGTAACAAGCACTTCTGGTATATTAACCGAGACAGCATGGGTTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCTTTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGATGTTGGCGCAGACGATTGAAGAATACTGCATTCTTCGATGATTCCTATTTGAGCTGTGGACGAGTCAATTCGACACTTTTTTCGATTCTCAACAATTCTACTACTTGTCCTTACAGAGATCCTGATGCTATCATTGATCCAACAGTTTTCAATTTTGGAATATTTATTGATGCGCTAACGTCGCGTGTGGTAGAATTGAATACAAGCTTTCATCATAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGGCAGAATCTGAAGACAAGCACTTATATAGGGGAGATAATCTTTGCTATCTTCATCGCCGTCTTTGGATTGGTCCTATTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGAGTACTTGAAAGAAAGAATTCGACGTTATGAACAATACAAATGGCAAGAAAATAGAGGTGTCGAAGAGGAGAATTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCGATTTTCGGGAGCATGGATGAAAAATTGTTGGATGCAATGTGTGATAAACTGAAACCAGTCCTATATACCGAGAAAAGTTGCGTTGTTCGTGAAGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAAGATTGTTGCTTCTCAATTTCGTCGTCTTATTAACAGAAAACAACTTCAACACACTTTCAGGTTCTATTCGTTGCAATGGAGGACATGGGGAGCGCGGTTCATACAAGTAGTTTGGCGTCGAAATAGAGAAAAAAGGGCTCATAAATTGTTACGTGAAGCGGAAGAAAAACAACAAAATGCTTCTGAAAATGAGGGAGAGACTTCACCAAGCTTTGCTTCCACTATATATGTGCAAAGGTTTGCATCCAATGCATTAAGGAGTTTAAGAAGTGGGAAAAGAATGCCACAGACAAAGAGATTGTTACCACTCTTGCCTAAGAAACCAAAAGAGCCAGATTTCAATACTCATAAAAACTAG 1623 0.3752 MSPKEKKFVRFEDWKSESSSFNFSQYDSSIDGFEKRKSKSSVTLTPTKNNESLNKQAPRCSVLDPQAMRYLSSHFIIDILSILPLPQMVILAMIPIPQCSVPYIAKDWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWVGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRRLKNTAFFDDSYLSCGRVNSTLFSILNNSTTCPYRDPDAIIDPTVFNFGIFIDALTSRVVELNTSFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPEYLKERIRRYEQYKWQENRGVEEENLIRNLPKDLRRDIKRHLCLDLLKKVPIFGSMDEKLLDAMCDKLKPVLYTEKSCVVREEVEAFALMHDDLKIVASQFRRLINRKQLQHTFRFYSLQWRTWGARFIQVVWRRNREKRAHKLLREAEEKQQNASENEGETSPSFASTIYVQRFASNALRSLRSGKRMPQTKRLLPLLPKKPKEPDFNTHKN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01013 540 SUPERFAMILY Voltage-gated potassium channels 65 301 - -
Trre16g01013 540 Gene3D - 57 303 - -
Trre16g01013 540 FunFam Cyclic nucleotide-gated ion channel 1 306 370 - -
Trre16g01013 540 Coils Coil 461 488 - -
Trre16g01013 540 Gene3D Helix hairpin bin 306 366 - -
Trre16g01013 540 SUPERFAMILY cAMP-binding domain-like 308 409 IPR018490 -
Trre16g01013 540 MobiDBLite consensus disorder prediction 509 540 - -
Trre16g01013 540 MobiDBLite consensus disorder prediction 525 540 - -
Trre16g01013 540 Pfam Ion transport protein 67 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre16g01013 540 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 409 535 - -
Trre16g01013 540 Gene3D Jelly Rolls 367 417 IPR014710 -
Trre16g01013 540 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01013 Trre-Chr16 8090348 8094130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01013 67 535 Ion Channels AT2G46430 50.466 1.37e-166 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01013 K05391 - gmx:100795201 573.163