Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01010 ATGGGCATCTTGAAGGTTCTTTTTTACTTAATATTTCCTGTCATACATGCCTTTAACAATTGCCCAGTTTCTTTATGTGGCAACTTTAGTTTACCTATTCGTTATCCCTTTATGCTAGAAGGTGAGCAATCTCCTTATTGTGGTTATCCTGGTTTCAACTTAATTTGTTCAAATCAAAGAAACTCAGTTCTAAAACTTCCTTATTCTGGCGAATTCTATGTACGCAACATAAACTATCTCACACAACAGATACAACTCTATGATCCTGATAATTGTCTTCCCAAACGTCTTCTAAGTCTCAATTTTTCAAATTCTCCTTTCGTTGCTACTTTTAATCGCGACTACACATTTTTAAGCTGTAAATCTCAGAATACAGGGTCACAATTCATTCCCATTGAATGTCTTAGTAATTCAACATATTTTGTATCAGCTGTTCTTTCTGTGAATTTGGTAAATTCACTTCCTGAGTCTTGTTCTGTTATAAAAAGGCTTTTAGTTCCTGTTGCAAGAAAAGAACGATTCGGAGAAAATCTCAGAGATGACCTTAATGCAGATCTTCAATTAACATGGGATAAACCTGACTGCAGTGTTTGTGAAACACAAGGGCTAATGTGTGGATTAGCAGACATTTACACCAATCAAGTTGTCTGTATGTCTGATAACCAAGAAGGTGCATCACGACAAGGACTTACAGTTTTCAGAATCATAGCATTATGCATTACTGGACCAGCTCTAATCTTTGTTATGTTAATGGCAACTTGTGTGTGCTACAATGATAGAATAGCCAACATTACCAGAAATGCTGTTTCTCGGTCGGCACCAGCTGCAATATCACCACAACCTGAAGTCACACTAGTTACAGGTCTAGACGAATCGACAATTGAATCTTATGAGAAAGTAGTTCTTGGGGAGAGTCGACGCGTACCTGGACCGAATGACGGATGTTGTTGGATATGCTTATCGGAATACAATAGTAAAGAGACAATAAGATGCATTCCTGAATGCAAACATTGTTTTCATGCTGATTGCATTGATGAGTGGCTTCGTATGAATATTACATGCCCTGTTTGTCGTAATTCTCCTGCTCCTTCTCCTCTTAATGTTGCTTCTAGTGAGGTTTGA 1122 0.377 MGILKVLFYLIFPVIHAFNNCPVSLCGNFSLPIRYPFMLEGEQSPYCGYPGFNLICSNQRNSVLKLPYSGEFYVRNINYLTQQIQLYDPDNCLPKRLLSLNFSNSPFVATFNRDYTFLSCKSQNTGSQFIPIECLSNSTYFVSAVLSVNLVNSLPESCSVIKRLLVPVARKERFGENLRDDLNADLQLTWDKPDCSVCETQGLMCGLADIYTNQVVCMSDNQEGASRQGLTVFRIIALCITGPALIFVMLMATCVCYNDRIANITRNAVSRSAPAAISPQPEVTLVTGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETIRCIPECKHCFHADCIDEWLRMNITCPVCRNSPAPSPLNVASSEV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01010 373 CDD RING-H2_EL5-like 315 358 - -
Trre16g01010 373 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 361 IPR046948 -
Trre16g01010 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 363 IPR013083 -
Trre16g01010 373 Pfam Ring finger domain 316 358 IPR001841 -
Trre16g01010 373 ProSitePatterns Zinc finger PHD-type signature. 316 357 IPR019786 -
Trre16g01010 373 SMART ring_2 316 357 IPR001841 -
Trre16g01010 373 Pfam Wall-associated receptor kinase galacturonan-binding 21 88 IPR025287 GO:0030247
Trre16g01010 373 Pfam Wall-associated receptor kinase C-terminal 151 220 IPR032872 -
Trre16g01010 373 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Trre16g01010 373 SUPERFAMILY RING/U-box 309 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01010 Trre-Chr16 8082346 8084399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01010 19 364 C3H Transcription Factor Family AT2G46495 44.759 5.50e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01010 - - aprc:113851081 527.709