Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre16g01008 | ATGGTAATTAAGCGTGCTGTGAAAACTGAAATGCCGAAATTGAAACGGTGTAAATTGGAGGAACCTGATTCTGAAGGTCTTGAAGGTTGTTCTGGGATTCAGAAGAAGCGTATGGTAAATGAGTTTTACTCGATAGGTGATGCTGATGATTTTAGCAGTGGTTCTGCTTCTTGGAGCAGCGAAGTTTCGCATTGTGATGGTGTTGGTGAGGTTGAGTTTAATTCAAATTCTGTGTTGTTGAATGGTAAAACGGTGAAAGAGTTAGGCTCGGTGGTGGCTCGGCCTCCATTATTGAGATCCTCACGCGGTCGCCTTCAGATGCTTCCGTCGAGGTTTAGTGACTCGGTTGTTGTTCTTGATGCATGGAAGAATCGAGGAGTGAAACCGGAGGATGGAGGTGGTGACGGTGATTCCAGCTTTGAAGATGATAGAAGTTTTGTTGAGGGTGATAAGGTTAAGAATAGTGACGTGAATTGTTTGAAAAATTCTGTGTGCTATCCGTGTGATGAAGTGAAGGTTGATGAAAGGGAGGGTGGTGATTTGTCTAGTGTGGGTAGAAAGACGATGAAGACTGATAGTAATGCTTCTGGTTCTGGTCTTAGTTCTGAGGGTATAGAGCAGAAGACTTATGGGAATGTTGGAAAGAGAAAAGAGGTTTATAGGCCAGAGGATTTTGCTTTGGGCGATATTGTTTGGGCAAAATGCGGGAAGAGATATCCGGCTTGGCCTGCTGTGGTGATTGAACCCATGTCACAGGCTCCTTATTCCGTATTGAACTGTTTTGTTCCTGATGCACTTTGTGTGATGTTTTTCGGTTATTCAAAAAATGGGACTCAAAGGGATTATGCATGGGTGAAGCAGGGAATGATATTCCCATTCTCGGAATTCTTGAACAGATTTCAGGGGCAGACCCAGTTGTACAAGAGCAAGCCGAGTGACTTCCAGATGGCGCTGGAGGAGGCAAAGTTGGCAGAAGATGGTATTCTGGAATCACATTTGGGAGCGGAGGAAGTGACTGATGTAGAAGCTCATCCTCCTGATAGACTTCAAGAGGTCTTAGTTTCAAATATTGATCAAGAATATTATTGTCAGGATCAGGATACTAGATGTTGTGCTACCTGTGGTTTGATGTTTCCATGCAAAACCATGAAGAAGGTTAAGGGTTCAAGTTATGCACTCCAATATCAATGCAAACTTTGTGCCAAGTTACTAAAATCAAAACAATATTGTGGAATTTGCAAAAAGATCTGGCACCATTCAGACGGTGGGAATTGGGTATGTTGTGATGGTTGCAATGTATGGGTGCATGCTGAGTGTGACAGAATTTCTACCGAACATTTCAAGGATCTGGAAAATACCGATTACTATTGTCCAGATTGCAAGGAAAGAATCAATTGTAAATTACCGGAATCACTAACACACAAGTCAAAAATCAAACCAGTGGAGAATAGCCAAAATGGTGTGGTACCTGAGAAGGTAACGGTGGTGTGCAATGGAATGGAAGGAATTTACTTCCCTAAGCTTCATTTAATTATGTGCAAGTGTGTCTCTTGTGGTTCAAGGAAGCAGACACCGAGTGAATGGGAACGACATACTGGAAGCAGAGCCAAAAAATGGAAATACAGTGTGAAAGTGAAAAGCACAATGCTACCACTTGAAAAATGGATTGCGGAGCACATTTCGCAAGATGGAATTCCCCAGGAATTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTTCATGCAAAATGGACGACAGAAAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGACGATAACAATATGATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGTGTAAGGGGTGTTCAAGATTTTACTTCTTGGGTCTGTAGAGTATGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACGTGAGGTTGTTTTCCAAAACGATTTGGCCATGGAACCTGCCCTTGGAATTCTAAGAATTCCTCCTAATTCCTTTGTGAAGATTTGTGTAATTTGTAAACAAAGCCACGGTTCTTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATGGCATGGAGAAGAATGGGACTCCAATAACAACGAAGCTAATATACTGCGCAGTTCATAGAGTCCCAAGTCCAGATTCTGTAATGGTTTCACATTCATCTCTGGGGATTTTCTCTCCTAGAACTTTGATTCAAAATCCCAAGGGATGCTTCCGGGGATCAAGGCTGGTTTCATCAAAAAATATAGAGCTCAATGAATTTTCAACCACTGAAAATGATAAGGTCGAGCCATTTTCTGCAGCCAGATGTCGTGTGTACCAGAGGTCTCGTAATAAGAAAGCTGATGTGCCAATAATTCACTTGCTGACGGGACCCAGCCATCACTCTTTAGGTGAAATAACTCAATTGAACAACTATGAGGATGCTAAAGTTTCTAAAGTATTTCCTTCTTTCAAGGAACGTCTTCACCATCTGCAGAAAACTGAAAAACTCAGAATTTGCTTTGGAAAGTCGGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGATATGGTTGTTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTCGCCGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGTGAGGAAGTAGTCATTGATGCAACACGCAGGGGCAATATAGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCCATGCAAGGATTTTGAGTTTGGGCAATCAACAGAACCGGATTGTTCTTATTGCAAAAACCAACGTTTCTGCTGGTCAAGAACTAACGTATGATTACAAGTTCGATCCAGATGAGCCGGAAGAACAGAAAGTTCCCTGCCTTTGCAGAGCACCAAATTGTAGAAAATTTATGAACTAG | 3078 | 0.4237 | MVIKRAVKTEMPKLKRCKLEEPDSEGLEGCSGIQKKRMVNEFYSIGDADDFSSGSASWSSEVSHCDGVGEVEFNSNSVLLNGKTVKELGSVVARPPLLRSSRGRLQMLPSRFSDSVVVLDAWKNRGVKPEDGGGDGDSSFEDDRSFVEGDKVKNSDVNCLKNSVCYPCDEVKVDEREGGDLSSVGRKTMKTDSNASGSGLSSEGIEQKTYGNVGKRKEVYRPEDFALGDIVWAKCGKRYPAWPAVVIEPMSQAPYSVLNCFVPDALCVMFFGYSKNGTQRDYAWVKQGMIFPFSEFLNRFQGQTQLYKSKPSDFQMALEEAKLAEDGILESHLGAEEVTDVEAHPPDRLQEVLVSNIDQEYYCQDQDTRCCATCGLMFPCKTMKKVKGSSYALQYQCKLCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDRISTEHFKDLENTDYYCPDCKERINCKLPESLTHKSKIKPVENSQNGVVPEKVTVVCNGMEGIYFPKLHLIMCKCVSCGSRKQTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWIAEHISQDGIPQELDQQQVLAFLQEKYEPVHAKWTTERCAVCRWVEDWDDNNMIICNRCQIAVHQECYGVRGVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRREVVFQNDLAMEPALGILRIPPNSFVKICVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHGMEKNGTPITTKLIYCAVHRVPSPDSVMVSHSSLGIFSPRTLIQNPKGCFRGSRLVSSKNIELNEFSTTENDKVEPFSAARCRVYQRSRNKKADVPIIHLLTGPSHHSLGEITQLNNYEDAKVSKVFPSFKERLHHLQKTEKLRICFGKSGIHGWGLFARRDIQEGDMVVEYRGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATRRGNIARLINHSCMPNCHARILSLGNQQNRIVLIAKTNVSAGQELTYDYKFDPDEPEEQKVPCLCRAPNCRKFMN | 1025 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre16g01008 | 1025 | ProSiteProfiles | Zinc finger PHD-type profile. | 591 | 642 | IPR019787 | - | |
| Trre16g01008 | 1025 | Pfam | PHD-finger | 409 | 462 | IPR019787 | - | |
| Trre16g01008 | 1025 | PANTHER | PHD FINGER PROTEINS | 12 | 460 | - | - | |
| Trre16g01008 | 1025 | SMART | PWWP_4 | 225 | 294 | IPR000313 | - | |
| Trre16g01008 | 1025 | ProSitePatterns | Zinc finger PHD-type signature. | 594 | 639 | IPR019786 | - | |
| Trre16g01008 | 1025 | MobiDBLite | consensus disorder prediction | 177 | 204 | - | - | |
| Trre16g01008 | 1025 | SMART | PHD_3 | 704 | 760 | IPR001965 | - | |
| Trre16g01008 | 1025 | SMART | PHD_3 | 409 | 461 | IPR001965 | - | |
| Trre16g01008 | 1025 | SMART | PHD_3 | 593 | 640 | IPR001965 | - | |
| Trre16g01008 | 1025 | CDD | PWWP_AtATX3-like | 228 | 327 | - | - | |
| Trre16g01008 | 1025 | Pfam | SET domain | 894 | 999 | IPR001214 | GO:0005515 | |
| Trre16g01008 | 1025 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 645 | 760 | IPR034732 | - | |
| Trre16g01008 | 1025 | Pfam | PHD-finger | 606 | 640 | - | - | |
| Trre16g01008 | 1025 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 643 | 761 | IPR013083 | - | |
| Trre16g01008 | 1025 | CDD | SET_SETD1-like | 872 | 1021 | - | - | |
| Trre16g01008 | 1025 | Pfam | PWWP domain | 228 | 324 | IPR000313 | - | |
| Trre16g01008 | 1025 | Gene3D | - | 487 | 568 | IPR010919 | - | |
| Trre16g01008 | 1025 | FunFam | Histone-lysine N-methyltransferase | 858 | 1025 | - | - | |
| Trre16g01008 | 1025 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 1 | 1025 | IPR025780 | - | |
| Trre16g01008 | 1025 | SUPERFAMILY | SET domain | 876 | 1022 | IPR046341 | - | |
| Trre16g01008 | 1025 | ProSiteProfiles | SET domain profile. | 883 | 1000 | IPR001214 | GO:0005515 | |
| Trre16g01008 | 1025 | MobiDBLite | consensus disorder prediction | 125 | 144 | - | - | |
| Trre16g01008 | 1025 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 404 | 464 | IPR013083 | - | |
| Trre16g01008 | 1025 | ProSiteProfiles | Zinc finger PHD-type profile. | 407 | 463 | IPR019787 | - | |
| Trre16g01008 | 1025 | SUPERFAMILY | SAND domain-like | 491 | 551 | IPR010919 | - | |
| Trre16g01008 | 1025 | SUPERFAMILY | Tudor/PWWP/MBT | 218 | 332 | - | - | |
| Trre16g01008 | 1025 | SMART | PostSET_3 | 1009 | 1025 | IPR003616 | - | |
| Trre16g01008 | 1025 | ProSiteProfiles | PWWP domain profile. | 227 | 296 | IPR000313 | - | |
| Trre16g01008 | 1025 | SUPERFAMILY | FYVE/PHD zinc finger | 406 | 470 | IPR011011 | - | |
| Trre16g01008 | 1025 | CDD | PHD_TCF19_like | 410 | 460 | - | - | |
| Trre16g01008 | 1025 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 588 | 642 | IPR013083 | - | |
| Trre16g01008 | 1025 | SMART | set_7 | 883 | 1006 | IPR001214 | GO:0005515 | |
| Trre16g01008 | 1025 | Gene3D | SET domain | 797 | 1025 | IPR046341 | - | |
| Trre16g01008 | 1025 | FunFam | Histone-lysine N-methyltransferase | 643 | 762 | - | - | |
| Trre16g01008 | 1025 | Gene3D | - | 218 | 328 | - | - | |
| Trre16g01008 | 1025 | SUPERFAMILY | FYVE/PHD zinc finger | 591 | 656 | IPR011011 | - | |
| Trre16g01008 | 1025 | ProSiteProfiles | Post-SET domain profile. | 1009 | 1025 | IPR003616 | - | |
| Trre16g01008 | 1025 | Pfam | PHD-zinc-finger like domain | 647 | 759 | - | - | |
| Trre16g01008 | 1025 | CDD | PHD_ATX3_4_5_like | 593 | 639 | IPR042011 | - | |
| Trre16g01008 | 1025 | MobiDBLite | consensus disorder prediction | 186 | 204 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre16g01008 | Trre-Chr16 | 8067143 | 8075467 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre16g01008 | 366 | 434 | EF-hand Containing Proteins | AT5G28340 | 53.623 | 6.57e-17 | 82.8 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Trre16g01008 | zf-HC5HC2H_2 | 7.2e-27 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre16g01008 | - | - | gmx:100793624 | 1543.1 |