Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00995 ATGGATGAAGATTTGCATCCACATCAATTTTCATCTTCAACCTCTAAGCAACATAGTAATGGTACACCTACTTCTACTAGTGTTCATGAGCTTCTTGAATGTCCTGTTTGTACAAATTCAATGTACCCTCCAATTCATCAGTGTCACAATGGACATACCCTATGTTCAACTTGTAAGACAAGGGTGCACAACAGGTGCCCAACTTGCAGACAAGAACTCGGCGATATTCGATGTTTAGCATTGGAGAAGATAGCAGAATCACTTGAACTTCCTTGCAGATACACCTCTATCGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGTCTATTTGTAACTTCAGACCTTACAACTGCCCTTATGCCGGGTCAGACTGTTCTGTTCTCGGTGATATTTCACAGCTTGTTGCTCATTTAAGGGATGACCACAGAGTTGATATGCATTCTGGATGCACTTTTAATCACCGTTATGTCAAGTCAAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAACAGTCTTTCACTGTTTTGGACAATATTTTTGTCTACATTTTGAAGCCTTTCAACTTGGAATGGCACCAGTTTACATGGCATTCCTCCGTTTCATGGGTGATGAAAGAGACGCCAGGAGCTACAGCTATAGTCTTGAGGTAGGAGGAAGTGGACGCAAACTAATCTACGAGGGGAGTCCAAGGAGCATTAGAGATAGCCACAAGAAAGTTAGAGACAGTCATGATGGCCTCATTATATACCAGAACATGGCGCTTTTCTTCTCCGGTGGAGATAGGAAAGAGCTGAAATTACGAGTAACAGGAAGAATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTTTGCATACCAAATTTGTGTAGCTAG 891 0.4175 MDEDLHPHQFSSSTSKQHSNGTPTSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYTSIGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVLGDISQLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARSYSYSLEVGGSGRKLIYEGSPRSIRDSHKKVRDSHDGLIIYQNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00995 296 CDD RING-HC_SIAHs 32 70 - -
Trre16g00995 296 SUPERFAMILY RING/U-box 22 73 - -
Trre16g00995 296 Pfam Seven in absentia protein family 76 275 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre16g00995 296 SUPERFAMILY TRAF domain-like 87 279 - -
Trre16g00995 296 MobiDBLite consensus disorder prediction 10 24 - -
Trre16g00995 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 142 IPR013083 -
Trre16g00995 296 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 146 275 IPR008974 GO:0005515
Trre16g00995 296 CDD Sina 148 276 - -
Trre16g00995 296 MobiDBLite consensus disorder prediction 1 24 - -
Trre16g00995 296 ProSiteProfiles Zinc finger RING-type profile. 34 70 IPR001841 -
Trre16g00995 296 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 17 281 - -
Trre16g00995 296 FunFam E3 ubiquitin-protein ligase SINAT5-like 143 275 - -
Trre16g00995 296 FunFam E3 ubiquitin-protein ligase SINAT3 84 142 - -
Trre16g00995 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Trre16g00995 296 ProSiteProfiles Zinc finger SIAH-type profile. 87 147 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00995 Trre-Chr16 7967144 7971186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00995 11 282 C3H Transcription Factor Family AT2G41980 75.735 7.00e-157 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00995 K04506 - gmx:100792687 593.964