Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00994 ATGGAATCAGATAGTACTGTGTCTTCTATGATCACGATGGATGAAGATTTGCATCCACATCAATTTTCATCTTCAACCTCTAAGCAACATAGTAATGGTACACCTACTTCTACTAGTGTTCATGAGCTTCTTGAATGTCCTGTTTGTACAAATTCAATGTACCCTCCAATTCATCAGTGTCACAATGGACATACCCTATGTTCAACTTGTAAGACAAGGGTGCACAACAGGTGCCCAACTTGCAGACAAGAACTCGGCGATATTCGATGTTTAGCATTGGAGAAGATAGCAGAATCACTTGAACTTCCTTGCAGATACACCTCTATCGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGTCTATTTGTAACTTCAGACCTTACAACTGCCCTTATGCCGGGTCAGACTGTTCTGTTCTCGGTGATATTTCACAGCTTGTTGCTCATTTAAGGGATGACCACAGAGTTGATATGCATTCTGGATGCACTTTTAATCACCGTTATGTCAAGTCAAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAACAGTCTTTCACTGTTTTGGACAATATTTTTGTCTACATTTTGAAGCCTTTCAACTTGGAATGGCACCAGTTTACATGGCATTCCTCCGTTTCATGGGTGATGAAAGAGACGCCAGGAGCTACAGCTATAGTCTTGAGGTAGGAGGAAGTGGACGCAAACTAATCTACGAGGGGAGTCCAAGGAGCATTAGAGATAGCCACAAGAAAGTTAGAGACAGTCATGATGGCCTCATTATATACCAGAACATGGCGCTTTTCTTCTCCGGTGGAGATAGGAAAGAGCTGAAATTACGAGTAACAGGAAGAATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTTTGCATACCAAATTTGTGTAGCTAG 927 0.4164 MESDSTVSSMITMDEDLHPHQFSSSTSKQHSNGTPTSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYTSIGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVLGDISQLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARSYSYSLEVGGSGRKLIYEGSPRSIRDSHKKVRDSHDGLIIYQNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00994 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 28 293 - -
Trre16g00994 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 98 IPR013083 -
Trre16g00994 308 FunFam E3 ubiquitin-protein ligase SINAT3 96 154 - -
Trre16g00994 308 CDD RING-HC_SIAHs 44 82 - -
Trre16g00994 308 ProSiteProfiles Zinc finger SIAH-type profile. 99 159 IPR013010 GO:0008270
Trre16g00994 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 154 IPR013083 -
Trre16g00994 308 SUPERFAMILY TRAF domain-like 99 291 - -
Trre16g00994 308 Pfam Seven in absentia protein family 88 287 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre16g00994 308 CDD Sina 160 288 - -
Trre16g00994 308 FunFam E3 ubiquitin-protein ligase SINAT5-like 155 287 - -
Trre16g00994 308 SUPERFAMILY RING/U-box 34 85 - -
Trre16g00994 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 158 287 IPR008974 GO:0005515
Trre16g00994 308 ProSiteProfiles Zinc finger RING-type profile. 46 82 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00994 Trre-Chr16 7967108 7971186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00994 23 294 C3H Transcription Factor Family AT2G41980 75.735 2.88e-157 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00994 K04506 - gmx:100792687 603.208