Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00992 ATGAAGATTGAAGTGGGTTTAGGAGGAAGTGGGTTATGGAATGAAGATGAAAAAGCTATGGTGATTGAAGTTTTAGGTGCTAATGCATTTGATTACTTGGTTACAAATTCAGTTTCAAATGAGAATCTTTTGATGGCAATTGGGAATAGTGAGAATCTTCAAAACAAGCTTTCTGATCTAGTTGAAAGATCCAACGTTTCAAATTTTAGTTGGAATTATGCAATTTTTTGGCAAATTTCTCAGTCAAAATATGGTGATTGGGTTTTAGGTTGGGGTGATGGATGTTGTAGAGAACCAAAAGAAGAAGAAGAAAAAGAAAATTTTGGAATGAAAAGTTTTCTTAGTCATAACGTTGTTGAGAATGAAAAACAACAAAGATTAAGGAAAAGGGTTTTGCAGAAGCTTCACACAACATTTGGTGGTTCAGATGAAGACAATTATGCTTTTGGATTGGATCATGTCACTGATACAGAGATGTTCTTTCTTGCTTCAATGTATTTTTCTTTTCCTAATGGACATGGTGGACCAGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGCTATGTGATGCATTGAAATCAAATAGTTCTGATTATTGTGTTAGGTCTCATTTGGCTAAATCTGTTGGATTTCAAACTATTGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAGTTGGGTTCTGTTAGAATGGTTGGTGAGAGCTTTGAATTGTTGCAAACTATTAAATCTGTGTTTTCATCACAATCATCACTTTCTAGGGTTAATTCGATTTCATCGTTGGACGAAAAGAGAGATGAGAATGCACCTTTTTCTAGTTTGAAAGTTGGGGAGATTATTAAGAACAATAATAATTATGGTAATCTTCATCGTCATCAGAATAATGATCATGGTAGAGTAGAGGGGGTTGGTGTTCCGAAGATTTTCGGGCAGGATTTGAACTCGGCGACACATTTTCGGGAGAAACTTATTATTAGGAAAATGGATGAGAGACCATCATGGGGAGGCTGTCCGAATGGGAATGGGAATGGAATTAGTTTTCCTAACGGTGTTCATGGTTCGGGTTGGAGAGGTAGTCCAGTTTTGAGGCAGCACGTGCCTGCGGATGCTTTTTCTCCTAGGCCTCCTTCTACGAGCAATGCGCCCGAGCTAGCCAATGGTGGTGGGAGGCATGATTTTGTGCTTAATAACTTTCAACAACAACGGACGGCCCAAATGCAAATTGATTTCTCAGGAGCCACGTCGAGGCCTTCTGTGAGATTGATTGTTGGTGAATCGGAGCTTTCTGATGTTGAGGCCTCTTGCAGGGAGGATAAACCGAGTCCCTCTGATGACAGGAGACCGAGGAAGAGGGGCAGAAAGCCGGCAAATGGAAGAGAAGAACCGCTAAATCATGTGGAGGCAGAGAGGCAAAGACGCGAGAAGCTAAACCAGCGTTTTTACGCCTTACGAGCTGTTGTGCCAAATATTTCCAAGATGGACAAAGCATCTTTGTTGGGAGATGCTATTGCTTACATCAACGAGCTTCAAGCAAAACTCAAGCAGATGGAATCCGAGAGAGAGCAATTCGGAAGCACCTCTAGAGATGGATCATCATCAATATTGCCGGCAAATCCTATCACAGAAAATCCCGATATCGAAATTCAAGCTGCACAAGACGGAGTTATCGTAAAGTAA 1677 0.4055 MKIEVGLGGSGLWNEDEKAMVIEVLGANAFDYLVTNSVSNENLLMAIGNSENLQNKLSDLVERSNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPKEEEEKENFGMKSFLSHNVVENEKQQRLRKRVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPNGHGGPGKCFASGKHLWLCDALKSNSSDYCVRSHLAKSVGFQTIVLVPTDLGVVELGSVRMVGESFELLQTIKSVFSSQSSLSRVNSISSLDEKRDENAPFSSLKVGEIIKNNNNYGNLHRHQNNDHGRVEGVGVPKIFGQDLNSATHFREKLIIRKMDERPSWGGCPNGNGNGISFPNGVHGSGWRGSPVLRQHVPADAFSPRPPSTSNAPELANGGGRHDFVLNNFQQQRTAQMQIDFSGATSRPSVRLIVGESELSDVEASCREDKPSPSDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKQMESEREQFGSTSRDGSSSILPANPITENPDIEIQAAQDGVIVK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00992 558 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
Trre16g00992 558 PANTHER MYC 39 557 IPR045084 GO:0003700|GO:0006355
Trre16g00992 558 CDD bHLH_AtAIB_like 457 522 - -
Trre16g00992 558 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 246 IPR025610 -
Trre16g00992 558 FunFam Transcription factor bHLH13 453 527 - -
Trre16g00992 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 463 524 IPR036638 GO:0046983
Trre16g00992 558 Gene3D - 453 525 IPR036638 GO:0046983
Trre16g00992 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Trre16g00992 558 MobiDBLite consensus disorder prediction 525 539 - -
Trre16g00992 558 MobiDBLite consensus disorder prediction 367 391 - -
Trre16g00992 558 SMART finulus 466 515 IPR011598 GO:0046983
Trre16g00992 558 Coils Coil 499 526 - -
Trre16g00992 558 MobiDBLite consensus disorder prediction 430 471 - -
Trre16g00992 558 MobiDBLite consensus disorder prediction 518 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00992 Trre-Chr16 7942713 7945541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00992 9 558 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.086 4.94e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g00992 bHLH-MYC_N 1.2e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00992 - - gmx:100807078 689.108