Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00991 ATGGAGCAAAATTTGAAAGATGACGTGGCAGTAAAAACCGTTACGGCCGAGAATTCCGCCGAGAAAATCGGGAAAGTTCGTTGCGGCACACGGCATCCAGTTTATCACGGTGTCCGGAAACGGCGGTGGGGAAAATGGGTATCGGAGATACGAGAGCCACGGAAGAAGTCACGAATATGGTTAGGATCTTTTCCGGCACCGGAGATGGCGGCGAAAGCTTACGACGTTGCGGCGTATTGTTTGAAAGGACGTAAAGCACAGCTTAATTTTCCTGATGAGGTTCACCGTCTTCCGTTGCTTCCTCCGCCCTCTTCATGTACTGCTAGGGATATTCAGACGGCGGCGGCTGAAGCTGCTAATATGATGATGGTTAAGGATGTTGCGTCGCCGGAGAATAGTAGCATTGGTTCTGGTGGTGGCGGTGATGATTTTTGGGGTGAGATTGAGTTACCGGAGCTTGTGAATGGAACCTGGTGGAGTTACTCTGTTGATGTTGCGGTGGTGCCAGAGATTGAAATTCCGGCGCAGCAATCCTTCACGGCATGTCTCTAG 552 0.5091 MEQNLKDDVAVKTVTAENSAEKIGKVRCGTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPLLPPPSSCTARDIQTAAAEAANMMMVKDVASPENSSIGSGGGGDDFWGEIELPELVNGTWWSYSVDVAVVPEIEIPAQQSFTACL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00991 183 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Trre16g00991 183 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Trre16g00991 183 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Trre16g00991 183 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Trre16g00991 183 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Trre16g00991 183 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Trre16g00991 183 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Trre16g00991 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 129 - -
Trre16g00991 183 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
Trre16g00991 183 FunFam Ethylene-responsive transcription factor 2 33 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00991 Trre-Chr16 7906210 7906761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00991 30 160 AP2-EREBP Transcription Factor Family AT1G01250 69.697 3.20e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g00991 AP2 7.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00991 K09286 - gmx:100802845 239.965