Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00987 ATGGCACATCTGGAGTGTAATCTTAGGGCTCCAGAAACTTCTCTACAAGAAAAAGGTATGCAAAGTGATGGTCTTTATAGAGAACTATGGAAGTTGTGTGCTGGACCATTGGTTGATGTTCCTGACTCTGGTGATCCAATTCTATACTTTCCACAAGGTCACATGGAACAACTTCAAGCATCAACTAATCAAGAATTCAACCAAGAAATTCCTCATTTCAATCTGCCGTCGCAGATTTTATGCCGTGTTGCTAACAATCAATTGCTGGCTGAGCAAGAAACTGATGAGGTTTATTCTTGTCTTTCTTTGATTCCAGAATCCGATGTAACTGAGCCTGTACTTCCTGATCTGAATCCTTCGGTGTCTCCAAAACCGAGGTTTCACTCGTTTTGCAAAATACTAACGGCTTCTGATACTAGCACACATGGAGGATTTTCTGTTTTGAGGAAGCATGCTACTGAGTGCTTGCCACCATTGGACATGACACAACCAACTCCAACTCAAGAGCTAGTAGCAAAAGATCTTCATGGAGTTGAGTGGAAGTTTAAGCACATATATAGAGGTCAACCGAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTCGCCTCCAAAAGATTGGTGGCTGGAGATGCTTTTGTTTTCCTAAGGGGAGAGGACGGGCAACTGAGAGTTGGCGTTAGGCGTATGGCTAAGCAGCATATGCCTATGCCTTCATCTGTGATATCAAGCCATTCCATGCTTCTCGGAATGCTTGCAACTGCTTCTCATGCTATCATGACTCGTACCTTGTTTGCTATTTATTACAAACCAAGGACTAGTCAGTTTATTGTTGGTTTGAACAAGTATTTGGAGGCAGTTAACAATTATAAGTTTTCTGTTGGTATGAGATTCAAGATGAGGTTTGAAGGAGACGACTCACCTGAAAGAAGATTTTCTGGGACTATTGTTGGGGTTGGGGATTTATCTGCTGGATGGCCAAATTCTCACTGGAGATCATTGAAGGTTCAATGGGATGAGCCAGCAACAATTCCAAGACCAGATAGAGTTTCTTCATGGGAGATAGAACCTTTCACAGCTTCTCCTTCTTTGAATGTCACTCAACCATCAGTCAAGGGCAAAAGATCTCGGCCCACCGATGTTTCACCTAGCGGCTATTGGTATCATGGATCATCGTCTCAGGCTACCCAATTAGCCGGTCCTTCCAACCAAGCTAACATAAAGATTGCACCTAGACCGCTCGATGACCCCACGAGCAATCATGGCTTAGATGCAAACAAGAAAACCAACTCCCTTGAATGTTGGTTGTTTGGGGTCAACCTGAACACTAACAACAAATGTACCAACAATGTTAATCCTTGTTTAGTGAAAGAAAATGGATCTCCAAATTTAACCATTGCTTCTACTAGTGGTCCCAAGGAATCTATCCTTACCAATGCATGTGAAACTGAAAAGGTCCAGAGTCCTAACAATTCATTGTCCACCAAAGGGCAGCTGCAGAAGAAAATTATTTGTGATGTATCACAAAATGAATGGCAGAACAAGCTGGCCACTGTACCATCCATGAGAACAAGGACTAAGGTGAAAATGCAAGGTGTAGCTGTTGGTAGAGCAATTGACTTAACCATGTTAAGTGGCTATGATGAACTCATTGATGAAATTGAAAAATTATTTGATATTAAAGGAGAGCTACGTTCACAAAACAAATGGAGAGTTACTTTCACTGATAATGAAAATGACATGATGCTAGTTGGTGATGATCCATGGCCGGAATTTTGTAGCATTGTCAAAAAGATTTTCATCTGTTCGAAAGAGGACTTAAAGACAATGAAATGCAAGTTACCTAACACTTCTTCATTAGAGATTGAACAGACATTGTTCAGCCTAGATTCACAAAATAGGAATGAGAATTAA 1917 0.4137 MAHLECNLRAPETSLQEKGMQSDGLYRELWKLCAGPLVDVPDSGDPILYFPQGHMEQLQASTNQEFNQEIPHFNLPSQILCRVANNQLLAEQETDEVYSCLSLIPESDVTEPVLPDLNPSVSPKPRFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQPTPTQELVAKDLHGVEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEDGQLRVGVRRMAKQHMPMPSSVISSHSMLLGMLATASHAIMTRTLFAIYYKPRTSQFIVGLNKYLEAVNNYKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDLSAGWPNSHWRSLKVQWDEPATIPRPDRVSSWEIEPFTASPSLNVTQPSVKGKRSRPTDVSPSGYWYHGSSSQATQLAGPSNQANIKIAPRPLDDPTSNHGLDANKKTNSLECWLFGVNLNTNNKCTNNVNPCLVKENGSPNLTIASTSGPKESILTNACETEKVQSPNNSLSTKGQLQKKIICDVSQNEWQNKLATVPSMRTRTKVKMQGVAVGRAIDLTMLSGYDELIDEIEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWPEFCSIVKKIFICSKEDLKTMKCKLPNTSSLEIEQTLFSLDSQNRNEN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00987 638 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 612 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre16g00987 638 FunFam Auxin response factor 128 232 - -
Trre16g00987 638 ProSiteProfiles PB1 domain profile. 524 605 IPR000270 GO:0005515
Trre16g00987 638 SUPERFAMILY DNA-binding pseudobarrel domain 123 259 IPR015300 -
Trre16g00987 638 MobiDBLite consensus disorder prediction 386 401 - -
Trre16g00987 638 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Trre16g00987 638 SMART B3_2 130 232 IPR003340 GO:0003677
Trre16g00987 638 MobiDBLite consensus disorder prediction 365 401 - -
Trre16g00987 638 Gene3D - 292 364 - -
Trre16g00987 638 CDD B3_DNA 128 230 IPR003340 GO:0003677
Trre16g00987 638 Pfam Auxin response factor 256 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre16g00987 638 Gene3D - 520 612 - -
Trre16g00987 638 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Trre16g00987 638 SUPERFAMILY CAD & PB1 domains 519 600 - -
Trre16g00987 638 Gene3D - 127 231 IPR015300 -
Trre16g00987 638 FunFam Auxin response factor 292 363 - -
Trre16g00987 638 Pfam AUX/IAA family 521 608 IPR033389 -
Trre16g00987 638 FunFam Auxin response factor 519 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00987 Trre-Chr16 7852630 7856873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00987 19 636 B3 DNA Binding Superfamily AT2G46530 54.153 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre16g00987 B3 7.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00987 K14486 - gmx:100790981 886.715