Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00975 ATGGGAAGAGCTCCTTGTTGTGCCAAAGTTGGATTGCACAAGGGTCCATGGACTACTAAAGAAGATACATTGCTTACAAAGTATGTTCAAGCTCATGGTGAAGGCCAATGGAAATCACTTCCCAAAAAAGCTGGGCTTCTTAGATGTGGAAAAAGTTGTAGACTTAGATGGATGAATTATCTTAGACCAGATATTAAAAGAGGTAACATAAGCCCTGAAGAAGATGATCTCATAATAAGATTACATTCACTTCTTGGAAATCGGTGGTCACTTATAGCCGGAAGATTACCAGGAAGAACAGACAATGAAATAAAGAATTACTGGAACACGCATCTTCTTAAAAAGATTCAAAGAAATCAACAAACATGTCATGTTTCATCAGATCATGATGATGAACAACAAGAACAATCCAAGAAAAAGAAGAAGAGCAACACCAACAACAAGAAGAGAAAGAAAAATGACAAGAAAAAAGGTGCTAAGAATGATAATCATCAAGAGGAAGAGAAAACTAAAGTTTATTTACCAAAACCCATTAGGATAAAGGCTATAAATTTACCAAGAACAGATAGTGGTAATTCATTTACTTTTGAATCAAATTCATCATTTGGTAGTCAAGAAAAAGAAAGAATAGAAGAACAAATGAAAAACAACAACAACAACATTGTTTGTGAGGTTGGTGAGAAAAATGGAAATGACGGTTTTGGATTCTCACGTGATGACCATGACTTAGTCAACGTTTGCAGACTAGATAATGAATACGAATCATATTTTGACACGTGTGGTGTTGGTGGTGATAATGGAACATTAGAGAGACTCTATGATGAATACTTGCAACTTTTGAATATGGAAGATTGCAATTACGAGATTGATTATTCTTTTGCTCAATCCTTCTTTGATTCAAATAATGATATTATTTGTTAA 921 0.3409 MGRAPCCAKVGLHKGPWTTKEDTLLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNISPEEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLLKKIQRNQQTCHVSSDHDDEQQEQSKKKKKSNTNNKKRKKNDKKKGAKNDNHQEEEKTKVYLPKPIRIKAINLPRTDSGNSFTFESNSSFGSQEKERIEEQMKNNNNNIVCEVGEKNGNDGFGFSRDDHDLVNVCRLDNEYESYFDTCGVGGDNGTLERLYDEYLQLLNMEDCNYEIDYSFAQSFFDSNNDIIC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00975 306 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre16g00975 306 MobiDBLite consensus disorder prediction 119 173 - -
Trre16g00975 306 FunFam Transcription factor TT2 70 143 - -
Trre16g00975 306 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre16g00975 306 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre16g00975 306 Coils Coil 149 169 - -
Trre16g00975 306 CDD SANT 16 61 IPR001005 -
Trre16g00975 306 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 208 - -
Trre16g00975 306 SMART sant 66 114 IPR001005 -
Trre16g00975 306 SMART sant 13 63 IPR001005 -
Trre16g00975 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre16g00975 306 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre16g00975 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre16g00975 306 MobiDBLite consensus disorder prediction 158 173 - -
Trre16g00975 306 MobiDBLite consensus disorder prediction 142 157 - -
Trre16g00975 306 FunFam Myb transcription factor 11 67 - -
Trre16g00975 306 CDD SANT 71 112 IPR001005 -
Trre16g00975 306 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre16g00975 306 Gene3D - 71 112 - -
Trre16g00975 306 MobiDBLite consensus disorder prediction 124 141 - -
Trre16g00975 306 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00975 Trre-Chr16 7783678 7785067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00975 1 116 MYB Transcription Factor Family AT5G49330 74.138 8.63e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g00975 Myb_DNA-binding 6.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00975 K09422 - gmx:100101857 351.673