Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00974 ATGTGGTTGAGGGAGAAGAGAGAAGAATCATCGACAGAGAAAGAAAACGGAGAGCAGGTGCAGTCTTGTAGACAAACAAGGTTTCAACTCATGGAAGGGTTAGCTCCTAATTCATGTCCAAGACAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACCAACACAAAATTTTGTTATTACAACAACTATAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGATCAAGAAAGAACAAGAAAGTAATCAATCCTTCTTCAACAAAAATTCCTGACCTAAATCCACCAACCCTAGTTCAAGTCTCATCTCTTTCTAATTCTCAAAACCCTAAAATGCAAGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATCATAATCATCATGGTATGTCTTCATCATATGTTGAGATGCATAATAACAATAATGAATCATCTTCTTCAGCTCTTGACCTACTTAGGTCTAGCATGGCATCTAGAGGTTTAAATCCTTATGCTAATAATAATAATACTTTGATGCCAAACTCAAATACTATTTATCCAACTGGATTCCCCATGCAAGAAGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATTAATGGAAATAGATCATCATATGATCATGTTCAAGTCCAAGAAGGTGGTGGTGGAAGACTTTTGTTCCCTTTTGGAGATGTTAATATTAATAAGCAGCTTTCTACAAGTGGTGTTGAAGTAGAACAACACAATAAAGAACAAGGAAATTCAACTGGATATTGGAATGGAATGATTGGTGAAGGATCATGGTAA 888 0.366 MWLREKREESSTEKENGEQVQSCRQTRFQLMEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVINPSSTKIPDLNPPTLVQVSSLSNSQNPKMQGGQDLNLAFPSMENYHHHNHHGMSSSYVEMHNNNNESSSSALDLLRSSMASRGLNPYANNNNTLMPNSNTIYPTGFPMQEVKPSLGFSIDGINGNRSSYDHVQVQEGGGGRLLFPFGDVNINKQLSTSGVEVEQHNKEQGNSTGYWNGMIGEGSW 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00974 295 MobiDBLite consensus disorder prediction 107 123 - -
Trre16g00974 295 Pfam Dof domain, zinc finger 52 108 IPR003851 GO:0003677|GO:0006355
Trre16g00974 295 MobiDBLite consensus disorder prediction 1 15 - -
Trre16g00974 295 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Trre16g00974 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 195 IPR045174 GO:0003700|GO:0006355
Trre16g00974 295 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g00974 295 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Trre16g00974 295 MobiDBLite consensus disorder prediction 95 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00974 Trre-Chr16 7724036 7726318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00974 46 295 C2C2-Dof Transcription Factor Family AT3G61850 49.466 2.24e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre16g00974 zf-Dof 4.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00974 - - gmx:778110 355.525