Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00969 ATGATTTCTGGTTCTGTTTTAGCATTGCATCCTTCTGACAATGTTTTCAGAACAAGGGAGTCTCCTGATTTTGAGGAGGACTTTGTAGAGAAAGATCCAACCGGCCGGTACATAAGGTACAATGAAATCTTGGGCAGGGGTGCCTTCAAGACTGTTTATAGGGCATTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTTAGGATCGATGGCCTCTTACACTCAGTAGATGATCTAGCAAAATTATATTCTGAAGTTCATCTATTGAAGTCTTTGAATCATGAAAATATCATTAAGTTCTACGACTCCTGGATTGATGATACGCAGAAAACCGTTAACATGATCACTGAACTCTTCACATCTGGAAACTTAAGACAGTACCGTAAGAAGCATAAATATGTTGAAATGAAAGCCATAAAAGGTTGGGCAAGACAGATTCTTCAAGGTTTAGTATATCTTCACGGTCACAGGCCGCCTATTATTCACCGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCACGGAGAAGTTAAGATAGGTGATCTCGGTTTGGCAATCGTCATGCAGCAGCCAACTGCTCGGAGCGTTATTGGGACACCCGAGTTTATGGCTCCAGAATTATATGAAGAGGAGTACAATGAACTTGTTGACATCTATTCTTTTGGGATGTCAATATTGGAGATGGTTACTCTTGAATATCCCTATAACGAATGCACCAACCCAGCTCAAATATTTAAGAAAGTTACCTCGGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGACCCTCAAATTAAGGAGTTTATTGAGAAATGCCTGGTTCCAGCATCTGAGAGATTGTCTGCAGAGGAACTTCTTAAAGACCCATTTCTACAAATTGAGAGTCAAAAGGATCCATTACCGTCTCCCATTAAAACTCCAAGAGCTACAGATACGCCAAGGTCTGGATCTATGGACATGGATGCTGACTACAAACATTTTTCCGGGAGTATCTATGCTGAAAGCAGCCAGGGAAGTCCACATTGTCCTATTTTTGAAGTCCAAAGGACCAATAAGAACAACGAGTTTAGGTTAAAAGGGACTAAAAATGATGATAACTCAGTATCATTGACCTTGCGTATTGCGGATACTTGTGGTCGGGTAAGGAATATACATTTTCTCTTTTACCTTGATACAGATACTGCAGATTCCGTGGCCTCAGAGATGGTTGAACATTTGGAGCTTGCAGATCATGATGTGGCTTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTTCCTTGGTGGAAACCTTCTCCTGATCATAACTCAACCGGAGGAATAAGTCTTTGTAGTGGTTCTACAAATGTCGATAGCCAAAGCTTAACGGCATCCCCTTGGAGTTCTATCATAACAAGTGTTCCATCAGAAACAGTTAGTGGTCAAGACATCTTTTCTGGATTTAATACGATTCCTAGAGATGGTTTTGAGACACCTGGAAAAAGCTGTTTTTACAAAAATGCTGATAATGCTATTTTCAAGGGTGCCTTTGATTCTCCTCCTTGTTTGGTTAACTCAGAAGATCGATATTCACGAGGATCAGGAGCTTCTGAGATAGCTGTTGATGATGTTTCAATGAAAAATGCCAATTGTCATGATTCCAAATTTCTCGGTGTTGGATATTTTAAATGCCTAACAAGGTCGATAACGGGGCTTGAAGTTGGTGATGCGTATTTCGAAAATTGTAAATTGCAGGCAGCAGATTACAATATTAGAGGAACCACTGTGAATTCAGAACTATCAAATGTTGTGAGCTTATCAAGTAGCTGTTGTTCCATGTCTTCAACCGAAAAGGATATTGATCTTGAGCTAAAAAATGAACTCGAGGCAATTGAGTCGCAATATCAGCATTGGATTGAGGAACTCACTAGAATGAAATTGGAGGCATTGGAAGCCGCCCGAAGGAGATGGACAGCCAAGAAGAAAGTAGCGATTCATTGA 1998 0.4024 MISGSVLALHPSDNVFRTRESPDFEEDFVEKDPTGRYIRYNEILGRGAFKTVYRAFDEVDGIEVAWNQVRIDGLLHSVDDLAKLYSEVHLLKSLNHENIIKFYDSWIDDTQKTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILQGLVYLHGHRPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMSILEMVTLEYPYNECTNPAQIFKKVTSGIKPASLNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQIESQKDPLPSPIKTPRATDTPRSGSMDMDADYKHFSGSIYAESSQGSPHCPIFEVQRTNKNNEFRLKGTKNDDNSVSLTLRIADTCGRVRNIHFLFYLDTDTADSVASEMVEHLELADHDVAFIAELIDYLIMKLLPWWKPSPDHNSTGGISLCSGSTNVDSQSLTASPWSSIITSVPSETVSGQDIFSGFNTIPRDGFETPGKSCFYKNADNAIFKGAFDSPPCLVNSEDRYSRGSGASEIAVDDVSMKNANCHDSKFLGVGYFKCLTRSITGLEVGDAYFENCKLQAADYNIRGTTVNSELSNVVSLSSSCCSMSSTEKDIDLELKNELEAIESQYQHWIEELTRMKLEALEAARRRWTAKKKVAIH 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00969 665 ProSiteProfiles Protein kinase domain profile. 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00969 665 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00969 665 FunFam probable serine/threonine-protein kinase WNK9 121 300 - -
Trre16g00969 665 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Trre16g00969 665 FunFam Probable serine/threonine-protein kinase WNK1 23 119 - -
Trre16g00969 665 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Trre16g00969 665 Gene3D - 370 442 - -
Trre16g00969 665 CDD STKc_WNK 36 295 - -
Trre16g00969 665 MobiDBLite consensus disorder prediction 299 321 - -
Trre16g00969 665 SUPERFAMILY Protein kinase-like (PK-like) 40 296 IPR011009 -
Trre16g00969 665 Pfam Protein kinase domain 41 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00969 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Trre16g00969 665 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 537 - -
Trre16g00969 665 Coils Coil 627 647 - -
Trre16g00969 665 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 373 428 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00969 Trre-Chr16 7662757 7666768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00969 604 665 MAP Kinase Kinase Kinase AT5G41990 35.484 4.64e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre16g00969 Pkinase 1.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00969 K08867 - gmx:100272197 933.324