Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00968 ATGATTTCTGGTTCTGTTTTAGCATTGCATCCTTCTGACAATGTTTTCAGAACAAGGGAGTCTCCTGATTTTGAGGAGGACTTTGTAGAGAAAGATCCAACCGGCCGGTACATAAGGTACAATGAAATCTTGGGCAGGGGTGCCTTCAAGACTGTTTATAGGGCATTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTTAGGATCGATGGCCTCTTACACTCAGTAGATGATCTAGCAAAATTATATTCTGAAGTTCATCTATTGAAGTCTTTGAATCATGAAAATATCATTAAGTTCTACGACTCCTGGATTGATGATACGCAGAAAACCGTTAACATGATCACTGAACTCTTCACATCTGGAAACTTAAGACAGTACCGTAAGAAGCATAAATATGTTGAAATGAAAGCCATAAAAGGTTGGGCAAGACAGATTCTTCAAGGTTTAGTATATCTTCACGGTCACAGGCCGCCTATTATTCACCGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCACGGAGAAGTTAAGATAGGTGATCTCGGTTTGGCAATCGTCATGCAGCAGCCAACTGCTCGGAGCGTTATTGGGACACCCGAGTTTATGGCTCCAGAATTATATGAAGAGGAGTACAATGAACTTGTTGACATCTATTCTTTTGGGATGTCAATATTGGAGATGGTTACTCTTGAATATCCCTATAACGAATGCACCAACCCAGCTCAAATATTTAAGAAAGTTACCTCGGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGACCCTCAAATTAAGGAGTTTATTGAGAAATGCCTGGTTCCAGCATCTGAGAGATTGTCTGCAGAGGAACTTCTTAAAGACCCATTTCTACAAATTGAGAGTCAAAAGGATCCATTACCGTCTCCCATTAAAACTCCAAGAGCTACAGATACGCCAAGGTCTGGATCTATGGACATGGATGCTGACTACAAACATTTTTCCGGGAGTATCTATGCTGAAAGCAGCCAGGGAAGTCCACATTGTCCTATTTTTGAAGTCCAAAGGACCAATAAGAACAACGAGTTTAGGTTAAAAGGGACTAAAAATGATGATAACTCAGTATCATTGACCTTGCGTATTGCGGATACTTGTGATACTGCAGATTCCGTGGCCTCAGAGATGGTTGAACATTTGGAGCTTGCAGATCATGATGTGGCTTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTTCCTTGGTGGAAACCTTCTCCTGATCATAACTCAACCGGAGGAATAAGTCTTTGTAGTGGTTCTACAAATGTCGATAGCCAAAGCTTAACGGCATCCCCTTGGAGTTCTATCATAACAAGTGTTCCATCAGAAACAGTTAGTGGTCAAGACATCTTTTCTGGATTTAATACGATTCCTAGAGATGGTTTTGAGACACCTGGAAAAAGCTGTTTTTACAAAAATGCTGATAATGCTATTTTCAAGGGTGCCTTTGATTCTCCTCCTTGTTTGGTTAACTCAGAAGATCGATATTCACGAGGATCAGGAGCTTCTGAGATAGCTGTTGATGATGTTTCAATGAAAAATGCCAATTGTCATGATTCCAAATTTCTCGGTGTTGGATATTTTAAATGCCTAACAAGGTCGATAACGGGGCTTGAAGTTGGTGATGCGTATTTCGAAAATTGTAAATTGCAGGCAGCAGATTACAATATTAGAGGAACCACTGTGAATTCAGAACTATCAAATGTTGTGAGCTTATCAAGTAGCTGTTGTTCCATGTCTTCAACCGAAAAGGATATTGATCTTGAGCTAAAAAATGAACTCGAGGCAATTGAGTCGCAATATCAGCATTGGATTGAGGAACTCACTAGAATGAAATTGGAGGCATTGGAAGCCGCCCGAAGGAGATGGACAGCCAAGAAGAAAGTAGCGATTCATTGA 1956 0.4034 MISGSVLALHPSDNVFRTRESPDFEEDFVEKDPTGRYIRYNEILGRGAFKTVYRAFDEVDGIEVAWNQVRIDGLLHSVDDLAKLYSEVHLLKSLNHENIIKFYDSWIDDTQKTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILQGLVYLHGHRPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMSILEMVTLEYPYNECTNPAQIFKKVTSGIKPASLNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQIESQKDPLPSPIKTPRATDTPRSGSMDMDADYKHFSGSIYAESSQGSPHCPIFEVQRTNKNNEFRLKGTKNDDNSVSLTLRIADTCDTADSVASEMVEHLELADHDVAFIAELIDYLIMKLLPWWKPSPDHNSTGGISLCSGSTNVDSQSLTASPWSSIITSVPSETVSGQDIFSGFNTIPRDGFETPGKSCFYKNADNAIFKGAFDSPPCLVNSEDRYSRGSGASEIAVDDVSMKNANCHDSKFLGVGYFKCLTRSITGLEVGDAYFENCKLQAADYNIRGTTVNSELSNVVSLSSSCCSMSSTEKDIDLELKNELEAIESQYQHWIEELTRMKLEALEAARRRWTAKKKVAIH 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00968 651 ProSiteProfiles Protein kinase domain profile. 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00968 651 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00968 651 FunFam probable serine/threonine-protein kinase WNK9 121 300 - -
Trre16g00968 651 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Trre16g00968 651 FunFam Probable serine/threonine-protein kinase WNK1 23 119 - -
Trre16g00968 651 Coils Coil 613 633 - -
Trre16g00968 651 CDD STKc_WNK 36 295 - -
Trre16g00968 651 MobiDBLite consensus disorder prediction 299 321 - -
Trre16g00968 651 SUPERFAMILY Protein kinase-like (PK-like) 40 296 IPR011009 -
Trre16g00968 651 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Trre16g00968 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Trre16g00968 651 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 525 - -
Trre16g00968 651 Pfam Protein kinase domain 41 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00968 Trre-Chr16 7662757 7666768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00968 571 642 MAP Kinase Kinase Kinase AT1G64630 42.500 6.26e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre16g00968 Pkinase 1.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00968 K08867 - gmx:100809602 897.116