Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00961 ATGTTTGGTCCTGAGGCGTGTTCACCAAAAAAATCACGATGGAAACGGTCACCAAACATAGGAATAGTCCTTGGACTAGCTCACAAGCTGAATTGCAGGACATTCCCTCATGCTCTTGTCATCCTGTGCATTCTAGCAAAGGATAATGATGAAGCTAAGGAAAGAATTGTAACGGTTGATAATGCAATTGAATCGATTGTCCATTCTCTTGGACGGCGTCAGGAGGAAAGAAAGTTAGCAGTAGCATTACTACTTGAATTGTCCAAATATGATTTGGCTCGAGAACATATTGGAAAAGTTCAAGGTTGTATACTGCTATTGGTGACTATGTCTAATGGAGATGACAATCAAGCTGCTGAAGATGCAACTGAGCTATTGGATAATCTTTCGTACTCTGATCAGAATGTTATACAGATGGCAAAGGCAAATTATTTCAAGCATTTACTGCAGCGTCTCTCCACAGGAGCAGATGATGTAAAGATGATTATGGCCGAAACATTAGCAGAAATGGAGTTAACTGACCACAATAAGAAGTCTTTATTTGATGGTGGTGTATTAGCTCCTCTTCTTCACTTGTTCTTACATAATGATCTTGAGGTTAAAAAAGTGGCCACAAAAGCCCTCAAGAATTTATCTAGTTTAAATAGAAATGGACTAGAAATGATTCGACAAAGGGCCGTGCGGCCGTTGCTTGACCTCCTTTTCCACCATAGCATACATACATCAAGTTTATGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATGCTCAAACACCAGTTTTATTGCTTGATTCTGATGATGATGTTTTTAACCTTTTCCCTCTTGTCGGTGTGACACAACCTGGTGTGCAACAAAACATTATCCAGACCTTTTATGTATTGTGTCAGTCACCCTCATCGTCACATATCAGGACCAAGCTAAATCAGTGCTCAGCTATCCCAGAATTGGTTGGGTTGTGTGAGAATGAGAATCTAAACCTAAGAGCAAGTGCTATCCTAAAATCTTCATCTGATGAAGAAGAAATACTTTCTGCTATGGAAATAATATGCCATCTTCCGGAAATTGATCAGATAACTCAATGGATTCTTGATGCTGGTATACTTCCGATCATTTATAAATATGTCCAAGACGGTAGAGACAGAGATCTTCAAAGGAGTAACTTGGTAGAGAAAGCGATTGGTGCTTTACGTCGTTTTACAGTTCCAACGAACTTGGAGTGGCAAAATATTGCAGCTGAAACCGGGATTATAACTGTTTTAGTTCAGTTGCTTGAAAGTGGAACAACCTTGACAAAACAACGTGCGGCGATATGTCTTGCTGAATTTTCTAAAAGCTCGGTTAAGCTCAGCAGACCGATTCCAAAACAAAAAGGACTATTATGTTGCTTCTCAGCTCCAAAAGAAATCGGCTGCAATGTTCATGGAGGAATATGCACCGTTAAGTCATCATTTTGCCTTTTCGTAGCTGAAGCAATTGGACCACTCACAAGGAATCTTGGAGAATCTGATTATGGAGTTTGTGAGGCTTCTTTGGATGCTTTATTAACATTGACTGAAGGTGATAGGATAGAGAGTGGTGGAAAAGTGCTTGCAAAAGCAAATGCAATACCATTAATAATAAAATTTCTTAGCTCTTCATCTCTTGCGTTACAAGAAAAGTCTCTACAAGTTTTGGAAAGGCTTTTTCAGCTAGTAGAATTCAAACAAATGTATGGAGCTTCAGCTCAAATGCCTCTAGTTGTGATTACATACAATCAATTTTGTGTTTGTGTTAGTGATTCATAA 1809 0.3908 MFGPEACSPKKSRWKRSPNIGIVLGLAHKLNCRTFPHALVILCILAKDNDEAKERIVTVDNAIESIVHSLGRRQEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSNGDDNQAAEDATELLDNLSYSDQNVIQMAKANYFKHLLQRLSTGADDVKMIMAETLAEMELTDHNKKSLFDGGVLAPLLHLFLHNDLEVKKVATKALKNLSSLNRNGLEMIRQRAVRPLLDLLFHHSIHTSSLWEDVAAIIMQLAASTISQDAQTPVLLLDSDDDVFNLFPLVGVTQPGVQQNIIQTFYVLCQSPSSSHIRTKLNQCSAIPELVGLCENENLNLRASAILKSSSDEEEILSAMEIICHLPEIDQITQWILDAGILPIIYKYVQDGRDRDLQRSNLVEKAIGALRRFTVPTNLEWQNIAAETGIITVLVQLLESGTTLTKQRAAICLAEFSKSSVKLSRPIPKQKGLLCCFSAPKEIGCNVHGGICTVKSSFCLFVAEAIGPLTRNLGESDYGVCEASLDALLTLTEGDRIESGGKVLAKANAIPLIIKFLSSSSLALQEKSLQVLERLFQLVEFKQMYGASAQMPLVVITYNQFCVCVSDS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00961 602 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 340 - -
Trre16g00961 602 SMART arm_5 173 213 IPR000225 GO:0005515
Trre16g00961 602 SMART arm_5 90 131 IPR000225 GO:0005515
Trre16g00961 602 SMART arm_5 530 571 IPR000225 GO:0005515
Trre16g00961 602 SMART arm_5 363 409 IPR000225 GO:0005515
Trre16g00961 602 SMART arm_5 49 89 IPR000225 GO:0005515
Trre16g00961 602 Gene3D - 340 468 IPR011989 -
Trre16g00961 602 Gene3D - 139 339 IPR011989 -
Trre16g00961 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 184 226 IPR000225 GO:0005515
Trre16g00961 602 Gene3D - 26 138 IPR011989 -
Trre16g00961 602 SUPERFAMILY ARM repeat 174 572 IPR016024 -
Trre16g00961 602 Gene3D - 475 580 IPR011989 -
Trre16g00961 602 Pfam Armadillo/beta-catenin-like repeat 174 213 IPR000225 GO:0005515
Trre16g00961 602 SUPERFAMILY ARM repeat 35 170 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00961 Trre-Chr16 7620237 7623723 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00961 20 572 U-box Gene Family AT1G20780 26.645 1.33e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00961 - - psat:127076110 916.376