Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00956 ATGATGGTTGTAGATATGCTAACTTCTGGTCCTACCTCGACTGCAATTTCTCAAATCGTAGAGACCATTAGTGAGTTCCTATTTTGTGCTAATGATGTACTTGTGGAGAAGGATAGTTTTAAGGAACTTGGCACTTATTTGGAAAGAATTATGCCGGTTTTAAAAGAATTGAGGAGAGAAAAAGTGAGTGATTCTGAGACATTCAACCATGCTATTGATATTATGAATCGCGAAACGAGAGAAGCGAAGCTACTTGCTTTAGAATGTAGTAAGAAGAGCAAGGTTTATCTGTTAATGAATTGCAGGTCCATTGTAAAGAAGTTAGAAAATCACACGAAGGAGCTAAGCAAGGCGCTTGGTCTTCTTCCTTTAGCTACATCAGGTCTTTCGGCCGGAATATTGGAAGACATTGAAAAGATTTGTGATAATATGGAGAAAGCTGGATTTAAGGCTGCAGTAGCAGAAGAGGAGATTTTAGAGAAAATTGAGTCAGGGATAAGAGAAAACAATGTCAATCGTTCGTATGCGAATAATTTAATGACTCTCATTGCTGAGGCTGTTGGAATTACAAATGAGAAGTCGACAATGAAAGTTGAACTTGAAGAGTTTAAGAAAGAAATTGAAAATGCCCGCGTTGATAAGAAAAAGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGAGCTGATGCAGCTTCGTCACCACGTGAAAGGAAACTGAAATACTTGTCAAAACGCCAATCTTTAGGTAGTCGAATATTGGAGCCTTTACAGTCATTTTATTGTCCTATCACACACGATGTTATGGTGGAACCTGTTGAAACTTCATCAGATCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGAAGAAGGAAATAAGTTGTGTCCTTTGACACAGATTCCTTTAGATACATCGGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAGGATAGAAACACAATGATTACAATTGCTACATTAAAAGAAAAAATACATCAGTTTGGAGATGATGATGAAGTGATTAACTGTCTAAAAACTCTTCAAGATTTGTGTGAGCAGAGAGAGCAACACAGAGAATGGTTGATGCTTGAGGACTACATACTAGTTCTTATTCAAATTCTCGGTTCGAGAAACCGCGATATAAGGAATCATGCTCTTGTCATCCTGTGCATTCTAGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTGTAACGGTTGATAATGCAATTGAGTCAATCGTCCATTCTCTTGGACGGCGTCAGGAGGAAAGAAAGTTAGCAGTAGCATTACTGCTTGAATTGTCCAAATATGATTTGGCTCGAGAACATATTGGAAAAGTTCAAGGATGTATACTGCTATTGGTGACTATGTCTAATGGAGATGACAATCAAGCTGCTGAAGATGCAACTGAGCTATTGGATAATCTTTCGTACTCTGATCAGAACGTTATACTAATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCATCTCACCACAGGAGCAGATGATGTAAAGATGATTATGGCCGAAACATTAGCAGAAATGGAGTTAACTGACCACAATAAGAAGTCTTTATTTGATGGTGGTGTATTAGCTCCTCTTCTTCACTTGTTCTTACATAATGATCTTGAGGTTAAAAAAGTGGCCACAAAAGCCCTCAAGAATTTATCCAGTTTAAATAGAAATGGACTAGAAATGATTCGACAAAGGGCCGTGCGGCCGTTGCTTGACCTCCTTTTCCACCATAGCATACATACATCAAGTTTATGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATGCTCAAACACCAGTTTTATTGCTAGATTCAGATGATGATGTTTTTAACCTTTTCCCTCTTGTCCGTGTGACACAACCTGGTGTGCAACAAAACATTATCCAGACCTTTTATGTATTGTGTCAGTCACCCTCATCGTCACATATCAGGACCAAGCTAAATCAGTGCTCAGCTATCCCAGATTTGGTTAAGTTGTGTGAGAATGAGAATCTAAACCTAAGAGCAAGTGCTGTAAAGTTATTTTCATGCTTGGTAGAGAGCTGTGATGAATCTATCATACTAGAGAATGTTGATCAGAAATGCATCAATACTTTACTTCAGATCCTAAAATCTTCATCTGATGAAGAAGAAATACTTTCTACTATGGAAATAATATGCCATCTTCCAGAAATTGATCAGATAACTCAATGGATTCTAGATGCTGGTATACTTACGATCATTTATAAATATGGTCAAGACGGTAGAGACAGAGATCTTCAAAGGAGTAACTTGGTAGAGAAAGCGATTGGTGCTTTACGTCGTTTTACAGTTCCAACGAACTTGGAGTGGCAAAATATTGCAGCTGAAACCGGGATTATAACTGTTTTAGTTCAGTTGCTTGAAAGTGGAACAACCTTGACAAAACAACGTGCGGCGATATGTCTTGCTGAATTTTCTAAAAGCTCGGTTAAGCTCAGCAGACCGATTCCAAAACAAAAAGGACTATTATGTTGCTTCTCAGCTCCAAAAGAAATCGGCTGCAATGTTCATGGAGGAATATGCACCGTTAAGTCATCATTTTGCCTTTTCGTAGCTGAAGCAATTGGACCACTCACAAGGAATCTTGGAGAATCTGATTATGGAGTTTGTGAGGCTTCTTTGGATGCTTTATTAACATTGACTGAAGGTGATAGGATAGAGAGTGGTGGAAAAGTGCTTGCAAAAGCAAATGCAATACCATTAATAATAAAATTTCTTAGCTCTTCATCTCTTGCGTTACAAGAAAAGTCTCTACAAGTTTTGGAAAGGCTTTTTCAGCTAGTAGAATTCAAACAAATGTATGGAGCTTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGAGGAGTAATGGTGGAATTAGATCCATGTCAGCTAGAGTATTGGCACATTTGAATGTACTTCATGACCAGTCATCATACTTTTAA 3021 0.38 MMVVDMLTSGPTSTAISQIVETISEFLFCANDVLVEKDSFKELGTYLERIMPVLKELRREKVSDSETFNHAIDIMNRETREAKLLALECSKKSKVYLLMNCRSIVKKLENHTKELSKALGLLPLATSGLSAGILEDIEKICDNMEKAGFKAAVAEEEILEKIESGIRENNVNRSYANNLMTLIAEAVGITNEKSTMKVELEEFKKEIENARVDKKKAEAMQMDQIIALLERADAASSPRERKLKYLSKRQSLGSRILEPLQSFYCPITHDVMVEPVETSSDQTFERSAIEKWFEEGNKLCPLTQIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVINCLKTLQDLCEQREQHREWLMLEDYILVLIQILGSRNRDIRNHALVILCILAKDNEEAKERIVTVDNAIESIVHSLGRRQEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSNGDDNQAAEDATELLDNLSYSDQNVILMAKANYFKHLLQHLTTGADDVKMIMAETLAEMELTDHNKKSLFDGGVLAPLLHLFLHNDLEVKKVATKALKNLSSLNRNGLEMIRQRAVRPLLDLLFHHSIHTSSLWEDVAAIIMQLAASTISQDAQTPVLLLDSDDDVFNLFPLVRVTQPGVQQNIIQTFYVLCQSPSSSHIRTKLNQCSAIPDLVKLCENENLNLRASAVKLFSCLVESCDESIILENVDQKCINTLLQILKSSSDEEEILSTMEIICHLPEIDQITQWILDAGILTIIYKYGQDGRDRDLQRSNLVEKAIGALRRFTVPTNLEWQNIAAETGIITVLVQLLESGTTLTKQRAAICLAEFSKSSVKLSRPIPKQKGLLCCFSAPKEIGCNVHGGICTVKSSFCLFVAEAIGPLTRNLGESDYGVCEASLDALLTLTEGDRIESGGKVLAKANAIPLIIKFLSSSSLALQEKSLQVLERLFQLVEFKQMYGASAQMPLVDLTQRSNGGIRSMSARVLAHLNVLHDQSSYF 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00956 1006 Coils Coil 193 220 - -
Trre16g00956 1006 SUPERFAMILY RING/U-box 248 331 - -
Trre16g00956 1006 CDD RING-Ubox_PUB 263 312 IPR045210 -
Trre16g00956 1006 SMART arm_5 406 446 IPR000225 GO:0005515
Trre16g00956 1006 SMART arm_5 530 570 IPR000225 GO:0005515
Trre16g00956 1006 SMART arm_5 447 488 IPR000225 GO:0005515
Trre16g00956 1006 SMART arm_5 917 958 IPR000225 GO:0005515
Trre16g00956 1006 SUPERFAMILY ARM repeat 717 996 IPR016024 -
Trre16g00956 1006 Pfam Armadillo/beta-catenin-like repeat 531 570 IPR000225 GO:0005515
Trre16g00956 1006 Gene3D - 858 1004 IPR011989 -
Trre16g00956 1006 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Trre16g00956 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Trre16g00956 1006 Gene3D - 433 841 IPR011989 -
Trre16g00956 1006 Gene3D - 333 432 IPR011989 -
Trre16g00956 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Trre16g00956 1006 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Trre16g00956 1006 Gene3D - 14 126 IPR036537 GO:0007166
Trre16g00956 1006 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Trre16g00956 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 332 IPR013083 -
Trre16g00956 1006 SUPERFAMILY ARM repeat 345 772 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00956 Trre-Chr16 7603682 7607706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00956 250 1006 U-box Gene Family AT1G76390 27.556 2.26e-57 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00956 - - psat:127076110 1734.92