Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00952 ATGACAACCCACATTGATAATCTTTGGATTTTCGCTCTTGCTTCTAAATTCACACATGAAAACATTGTTTACTCACTTTTGATCATGGCTTTACTCTGGCTAACCATGACTTTCTTTTACTGGTCTCACCCTGGTGGTCCTGCTTGGGGAAAGTACTATTATTCCAACAACAACAACAAAAACCAAAACAAAAACAACAACAACAACAACCTTAATTCCTCTCAAATATTCATTCCTGGTCCAAAAGGGTACCCTTTAATTGGAAGCATGAATCTCATGTCTTGTTCAATAGCACACCAAAGAATTGCTTCCACAGCTAAAACATGCAAAGCTACAAGACTCATGGCTTTTAGTCTTGGTGACACACGTGCCATAGTCACGTGTAATCCTGATGTAGCCAAAGAGATTCTTCATAGCTCTGTTTTCGCTGATCGTCCTATCAAAGAATCTGCTTACTCTCTTATGTTCAATAGAGCAATTGGTTTTGCTCCTTATGGTGTTTATTGGAGAACCCTTCGAAAAATTTCCACTAACCATCTTTTCTCACCCATGCAAATCAAATCATCTGGGCTGCAACGAACTGAAATTGCAGCCCAGATGATTGGCTTGTTTCGTAACCGCAGCTATAAAAGCTGCGGTTTTGGTGTTCGTGATGTTTTGAAAAAAGCATCGCTAAATAACATGATGTGCTCTGTTTTTGGACAGAGGTTTAAGATTGATGAAGTTAATGAGAGAATGATGGAACTTAGTGGATTAGTTGAAAAAGGTTATGATTTGTTGGGTAGTCTTAATTGGGGTGATCATCTTCCTTTTTTGAAAGATTTTGATGTTCAGAAAATCCGGTTCAATTGTTCTGAATTAGTGCCTAAAGTGAACCGGTTTGTTGGTTCAATTATTTCGGACCATCGAGCCGACAAAAACCAAACCAACAAGGATTTCGTTCATGTCTTGCTCTCTCTTCAAGAACCAGATAAATTGTCTGACTCTGACATGGTTGCTGTTCTCTGGGAAATGATATTTAGAGGGACCGACACAGTGGCTGTTTTGATAGAATGGATACTAGCGAGGTTGGTGCTACATCCAGACGTGCAAAGGAAGGTACAAAAGGAGCTTGATGAGGTGGCAAGCGGAGACTCACGTGTGTTTACGGAGGAGGATGTGGCGGCGACGGTTTATTTACCTGCGGTGATTAAGGAGGTTTTGAGGCTACATCCACCGGGTCCACTACTTTCGTGGGCCCGATTAGCCATCACTGATACGACAATTGATGGATATCACGTGCCAGTGGGGACTACAGCCATGGTAAACATGTGGGCCATAGCAAGGGACCCAAATGTGTGGAGGGACCCACTTGAATTTAATCCCGATAGGTTTGTGAATGAAGGGGCGGAATTTTCGGTTCTTGGATCGGATTTAAGGTTGGCTCCATTCGGGTCGGGTAGGAGAAGTTGCCCCGGAAAGAATTTAGGTTTAACTACTGTAACTTTTTGGGTTGCTAAGCTTTTGCAAGAATTTGAATGGCTACCGTCGAACGCTGAGAACGATGTTGATTTAACGGAGGTGCTAAGGCTTTCGTGTGAAATGGCTAACCCTCTTACGGTTCAAGTGCGCCCGAGGCGTTAG 1623 0.4264 MTTHIDNLWIFALASKFTHENIVYSLLIMALLWLTMTFFYWSHPGGPAWGKYYYSNNNNKNQNKNNNNNNLNSSQIFIPGPKGYPLIGSMNLMSCSIAHQRIASTAKTCKATRLMAFSLGDTRAIVTCNPDVAKEILHSSVFADRPIKESAYSLMFNRAIGFAPYGVYWRTLRKISTNHLFSPMQIKSSGLQRTEIAAQMIGLFRNRSYKSCGFGVRDVLKKASLNNMMCSVFGQRFKIDEVNERMMELSGLVEKGYDLLGSLNWGDHLPFLKDFDVQKIRFNCSELVPKVNRFVGSIISDHRADKNQTNKDFVHVLLSLQEPDKLSDSDMVAVLWEMIFRGTDTVAVLIEWILARLVLHPDVQRKVQKELDEVASGDSRVFTEEDVAATVYLPAVIKEVLRLHPPGPLLSWARLAITDTTIDGYHVPVGTTAMVNMWAIARDPNVWRDPLEFNPDRFVNEGAEFSVLGSDLRLAPFGSGRRSCPGKNLGLTTVTFWVAKLLQEFEWLPSNAENDVDLTEVLRLSCEMANPLTVQVRPRR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00952 540 PRINTS E-class P450 group I signature 330 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS E-class P450 group I signature 350 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS E-class P450 group I signature 394 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS E-class P450 group I signature 436 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS E-class P450 group I signature 223 241 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS E-class P450 group I signature 474 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS E-class P450 group I signature 484 507 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PANTHER CYTOCHROME P450 78A7-RELATED 1 540 - -
Trre16g00952 540 FunFam Cytochrome P450 78A5 70 539 - -
Trre16g00952 540 Gene3D Cytochrome P450 63 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 Pfam Cytochrome P450 79 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 CDD CYP78 110 532 - -
Trre16g00952 540 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 477 486 IPR017972 GO:0005506|GO:0016705
Trre16g00952 540 PRINTS P450 superfamily signature 484 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS P450 superfamily signature 475 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS P450 superfamily signature 341 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 PRINTS P450 superfamily signature 395 406 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00952 540 SUPERFAMILY Cytochrome P450 78 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00952 Trre-Chr16 7521311 7523222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00952 1 540 Cytochrome P450 AT2G46660 62.936 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00952 K20619 - gmx:100798388 808.905