Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00950 ATGTTAGACTTGGAAAATATGGAATATGGTCAATATAGTTATTCAACAGAAGCTGGTGAGGAAGAAACTTACACAACTAGTATCACAAGTTCCATGAGAAAGAAGAAAAATAAGAATCCAAAGAGGTTTAGTGATGAACAAATCAAATCATTAGAAACTATGTTTGAGACTGAATCAAGACTTGAACCTAGAAAGAAGTTGCAGTTGGCAAGAGAACTTGGATTGCAACCAAGACAAGTTGCTATTTGGTTTCAAAATAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATACAATAAACTTCAAAATAGTTACAACAATTTGGCTTCAAAGTTTGAATCAATGAAGAAGGAAAGACAAACATTACTAATACAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCAATAGAGCAAAGTCAGAGTAGTTCACAAGTTAAAGAAGCAAACAGCATGGAAAGTGAATCAGGAAATGGAGGAACAATCAAATGTGAGACTGAGATAAAACCAAGTACTTCAATAGAAAGATCAGAACATGTTCTTGATGTTCTTTCAGATGATAACACAAGCATAAAGGTTGAATACTTTGGAATGGAAAATGAACCTGGCCTAATGAATTTTGCTGAACATGCTGATGGTTCCTTAACATCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATCTATTAGGCCAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTAA 741 0.3441 MLDLENMEYGQYSYSTEAGEEETYTTSITSSMRKKKNKNPKRFSDEQIKSLETMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESESGNGGTIKCETEIKPSTSIERSEHVLDVLSDDNTSIKVEYFGMENEPGLMNFAEHADGSLTSPEDWSAFESNDLLGQSSCDYQWWDFWS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00950 246 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Trre16g00950 246 MobiDBLite consensus disorder prediction 139 166 - -
Trre16g00950 246 Coils Coil 86 134 - -
Trre16g00950 246 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Trre16g00950 246 Gene3D - 29 103 - -
Trre16g00950 246 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Trre16g00950 246 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
Trre16g00950 246 MobiDBLite consensus disorder prediction 20 43 - -
Trre16g00950 246 Pfam Homeodomain 41 92 IPR001356 GO:0003677
Trre16g00950 246 Pfam Homeobox associated leucine zipper 94 135 IPR003106 GO:0006355|GO:0043565
Trre16g00950 246 SUPERFAMILY Homeodomain-like 24 96 IPR009057 -
Trre16g00950 246 SMART HOX_1 34 98 IPR001356 GO:0003677
Trre16g00950 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 33 167 IPR045224 GO:0003700
Trre16g00950 246 FunFam Homeobox-leucine zipper protein ATHB-7 22 94 - -
Trre16g00950 246 CDD homeodomain 43 95 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00950 Trre-Chr16 7477579 7478932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00950 8 246 Homeobox Transcription Factor Family AT2G46680 48.649 8.53e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g00950 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00950 K09338 - gmx:100811208 358.221