Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00948 ATGGGTATGGTTGAAAAGAGTCCAAAGAATCTTCATTTGCATAGACATCATATTCAACATAAGCATGAGTTCAAAGGTGTTCCAAAAGGGTTTATGGCAATAAAAGTTGGTTTAGGAGAAGAACAACAAAGGTTTGTTGTTCCTGTTTTGTACTTCAATCATCCTCTTTTCATTCAACTATTGAAAGAGGCAGAAGAAGAATATGGATTTGATCAAAAGGGAACAATTACTATTCCTTGCCATGTTGAAGAATTCAAACAAGTTCGTGGTTTGATTGATAGAGACAAGAATCTTCATCAACATGTTGGTTGTTTTGGTTTATGA 324 0.3426 MGMVEKSPKNLHLHRHHIQHKHEFKGVPKGFMAIKVGLGEEQQRFVVPVLYFNHPLFIQLLKEAEEEYGFDQKGTITIPCHVEEFKQVRGLIDRDKNLHQHVGCFGL 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00948 107 Pfam Auxin responsive protein 21 88 IPR003676 GO:0009733
Trre16g00948 107 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 19 87 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00948 Trre-Chr16 7425396 7425719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00948 9 99 Calmodulin-binding Proteins AT5G20810 43.478 3.98e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00948 K14488 - gmx:111188139 166.007