Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00945 ATGGAAGATTTCATCATTTCACCTTCTTCATCTTCTTCTATGATTTCACTCTCCCATGAAAACCCTTCACCACAAAAACAAACACAAACACAAACCCTTCAACAAAAGCTTCAATATTTACTCCAAACTCAATCCGACAATTGGGTCTATGCCATTTTTTGGCAAACATCAAAAGATGAAAAAGGTAACACTTTCTTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAAAGAAACAACAACTACTACTACTTCAAACAAATCAGACAGTGACACGTGTACAAACGGTGATGCTGAATGGTTCTATGTTATGTCGTTGACCAGGAATTTTTGTGTCGAATATTGTCCACAATTAGAAACACCAAAAAATGAGTGTATTGATGAGAAAAGAGAATTGAAGAAGAGAGGAAGAAAGCCAATAACAGGAACAACTCAAACACCAATGAATCATGTAGAAGCAGAGAGACAGAGGAGAGAGAAACTGAATCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAATGTTTCAAGGATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTATATCAATGAGTTAAAAGCAAAGATTAAAGATTTAGAATCTGAGAAGAAAAGGGAATCTAAGAAAGTGAAGATAGAAACTATGGATAATCAAAGTACAGTGACAACTTCAACTGTTGTAGATCAAAAAAGACATTGTAATAGTGTTATTGCTTTGGAAATTGATGTGAAGATTATAGGAAATGATGCTATGATTAGAGTTCAATCAGAGAATGTTAATCATCCTGGTGCTAGATTAATGAGTGTATTCAAGGATTTGGAGTTTCAGGTACATCATGCTAGTATATCTTGTGTTAATGATGTTATGCTTCAAGATGTTGTTGTTGTTCAAGTTCCTAATGAGATGAGAAATGAAGAGAGTCTTAAATCTGCAATTCTCATGAGATTAGATGATCAAGAGTGA 969 0.3478 MEDFIISPSSSSSMISLSHENPSPQKQTQTQTLQQKLQYLLQTQSDNWVYAIFWQTSKDEKGNTFLSWGEGHFQGTKETTTTTTSNKSDSDTCTNGDAEWFYVMSLTRNFCVEYCPQLETPKNECIDEKRELKKRGRKPITGTTQTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKAKIKDLESEKKRESKKVKIETMDNQSTVTTSTVVDQKRHCNSVIALEIDVKIIGNDAMIRVQSENVNHPGARLMSVFKDLEFQVHHASISCVNDVMLQDVVVVQVPNEMRNEESLKSAILMRLDDQE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00945 322 PANTHER MYC 12 112 IPR045084 GO:0003700|GO:0006355
Trre16g00945 322 Gene3D - 141 211 IPR036638 GO:0046983
Trre16g00945 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Trre16g00945 322 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 33 112 IPR025610 -
Trre16g00945 322 Coils Coil 184 211 - -
Trre16g00945 322 MobiDBLite consensus disorder prediction 1 29 - -
Trre16g00945 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 208 IPR036638 GO:0046983
Trre16g00945 322 SMART finulus 151 200 IPR011598 GO:0046983
Trre16g00945 322 Pfam Helix-loop-helix DNA-binding domain 149 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00945 Trre-Chr16 7362835 7364280 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00945 124 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.500 5.17e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g00945 bHLH-MYC_N 7.4e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00945 - K13422 gmx:100804965 248.44