Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00944 ATGCTTGTTGTTGTATTGGAGTTTAAGGTTTATGTTTACAATTTCATGGATTTCAAGGTTATTCGTCAGGTGGATACATTCAGAAACCCTATGGGGCTTTGTGTTGTTTCTCAGCTTGCTGATTCAACGGTGCTGGTGTGTCATGGATTGCAGAAAGGTCAGGTTCGTGTGGATCACTATGCGAAGAAGAAGATCAATTATGGTTGGGCTCATGATTTGAGTTTGGCGTGTTTTGGTCTCATGATTGATGGAAAGCTCATTCGTGTTTTCGATACGGAGAATGGCTTGTTTCCGAACCGTATCCCCAATCGTGAGGACAAGACAACAATGAAAACTATAACCAAGGTTGTCCTTGATAACAAAGTTTATCTTGGAATCGTCTTTGATATCGATGTGGACAGATCTGCTGCTGTGGATTCTACTGGTTGTGAATTCAACCGGAATCGTTTGATTGGCTTAATGGCAGTTATTGTTCTTGAGGAAATGATTCTGCACCCGAGTAGGAAAGAAAGAAGACGAAAAAAATCGGATAATTCTGCACCTGAGTCAACTTCTTCGCAATCTGATGATTCGGATAGAAGCCGGAGAAGTGGTCACCGGAGTGACCGGAGGTCACGGAGGCGGAGGAGCCGGCATGAATCGGATTCTGAAAGTTCTTCAGATGACAGTGGTAGTGATAGAGATGGAAGGAAGAGAAAATCGTCCAGGAAAATTACTGAAGAGGAAGTAGCACAGTACTTGGCTAAGAAGGCACAGAGAAAGGCATTGAAAGTTGCAAAGAAATTGAAGACTAATACTGTGTCGGGATATTCGAATGATTCAAACCCATTTGGTGATTCCAATCTTAATGAGAATTTGAGGAAACTTTATATTTGTGGGGAGTGTTACGCTTCGTCGGGTTGTTGTGCTCTCGCTGCGAAGATAATCACTAGTCTTGCTGTTGTGGAGGTTAACAAGGCGACTGTTGGAGCTTTTCCAGGGGCAATTGAAGCTCTGGTGGCGATTCTTCGTGATGGGAAGGGCAGAGAGAGGAAAGAAGCTGCTACCGCGCTTTACGCGCTTTGCTGTTTTTGTGATAATCGGAAAAGGGCGGTGGATTGTGGCGTGGTGCCGATTTTGCTGAGGAGTGTTGAATGTGGACTTGAAAGAGGTGTTGAGGTTATTGGTCTTTTGGTTAAGTGTAAGGAAGGTAGAGAACAATTGGAAAGTTATGGTGGGTGTGTGAAGATTCTTGTTCATGTGTTGAGGAATGGAAGCTCTAGAGGCATAAATGAGTACAATTTTGAGAAAAGCCACATCTAG 1302 0.4355 MLVVVLEFKVYVYNFMDFKVIRQVDTFRNPMGLCVVSQLADSTVLVCHGLQKGQVRVDHYAKKKINYGWAHDLSLACFGLMIDGKLIRVFDTENGLFPNRIPNREDKTTMKTITKVVLDNKVYLGIVFDIDVDRSAAVDSTGCEFNRNRLIGLMAVIVLEEMILHPSRKERRRKKSDNSAPESTSSQSDDSDRSRRSGHRSDRRSRRRRSRHESDSESSSDDSGSDRDGRKRKSSRKITEEEVAQYLAKKAQRKALKVAKKLKTNTVSGYSNDSNPFGDSNLNENLRKLYICGECYASSGCCALAAKIITSLAVVEVNKATVGAFPGAIEALVAILRDGKGRERKEAATALYALCCFCDNRKRAVDCGVVPILLRSVECGLERGVEVIGLLVKCKEGREQLESYGGCVKILVHVLRNGSSRGINEYNFEKSHI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00944 433 MobiDBLite consensus disorder prediction 208 239 - -
Trre16g00944 433 SUPERFAMILY ARM repeat 300 418 IPR016024 -
Trre16g00944 433 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 85 142 IPR005845 GO:0005975
Trre16g00944 433 Gene3D - 227 425 IPR011989 -
Trre16g00944 433 MobiDBLite consensus disorder prediction 168 239 - -
Trre16g00944 433 SUPERFAMILY Phosphoglucomutase, first 3 domains 82 142 IPR016055 GO:0005975|GO:0016868
Trre16g00944 433 Gene3D - 71 166 - -
Trre16g00944 433 PANTHER PHOSPHOHEXOSE MUTASE 88 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00944 Trre-Chr16 7356081 7359135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00944 298 428 U-box Gene Family AT4G21350 62.595 7.28e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00944 - - gmx:100785141 196.823