Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00943 ATGGAAGAATTCATCATTTCACTCCCTCATGAAAACCCTTCTACACAAAAACAAACACAAACCCTTCAACAAAAGCTTCAACTTTTACTCCAAACCCAATCCGATAATTGGGTCTATGCCATTTTTTGGCAAACAACAAAAGATGAAAAAGGTAACCCTATCTTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAACAAAGAAGCAACAACTTCAAACGGAAGAAACGACACTGACACTGACACAGGCACAAATGGAGATGCTGAATGGTTCTATGTTATGTCATTGACTCGAAATTTTTGTGTCGGTAATTTTTCTTCCATTTCTTTACCCGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTAAATAGCAAGCATGAACTTCAAATTTATAATTGTGAGAGATCCAATGAAGCACACACGCACGGAATCGAAACCTTAATATGTATTCCAACAACTAATGGTGTAATCGAAATGGGTTCTTATGAAAATATCCAACAAAATTGGAACCTCGTACATCAAGCAAAATCTATGTTCGAAACAATATCGTCAGAATCAAGCACAAAATCAGATCTTATCTCCACCACCCCACTCGACAAAATCCAAACTGTCGACCAAAACATCTCATTCTCCAACATGGGTCTCGTCCCTAGTACCAGAGACACTGGTACCAAAGACGAAACCGAGGAGACACAAAAAAATATGAACAAAAATTTAAAACAAAAGCATAACATTGTTATTTCATCATGTTATGTTGATTCTGAATATTCTGATTCAGAATATTGTCCACAATTAGCAACACCGAAAAAAGACTCTGCTGATGAGAAAACAGAATCGAAGAAGAGAGGAAGAAAACCATCAACAGGAACAACTCAAACACCAATAAACCATGTAGAAGCAGAGAGACAAAGAAGAGAGAAACTGAATCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAATGTTTCAAGGATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTATATCAATGAGTTAAAAGCAAAGATTAAAGATTTAGAATCTGAGAAGAAAAGGGAATCTAAGAAAGTGAAGATGGAAACTATGGATAATCAAAGCACAGTGACAACTTCAACTGTTGTGGATCAAAAAAGACATTGTAATAGTGTTATTGCTTTGGAAATTGATGTGAAGATTATAGGAAATGATGCCATGGTTAAAGTTCAATCAGAGAATGTTAATCATCCTGGTGCTAGATTAATGAGTGTATTCAAGGATTTGAAGTTTCAGGTACATCATGCTAGTATATCTTGTGTTAATGATGTTATGCTTCAAGATGTTTTTGTTGTTCAACTTCCTAAAGAGATGAGAAACGAAAGGAGTCTTAAATCTGCAATTCTCAAGAGATTAGATGATCAGGAGTAA 1413 0.3574 MEEFIISLPHENPSTQKQTQTLQQKLQLLLQTQSDNWVYAIFWQTTKDEKGNPILSWGEGHFQGTNKEATTSNGRNDTDTDTGTNGDAEWFYVMSLTRNFCVGNFSSISLPGKAFALDSVLWLNSKHELQIYNCERSNEAHTHGIETLICIPTTNGVIEMGSYENIQQNWNLVHQAKSMFETISSESSTKSDLISTTPLDKIQTVDQNISFSNMGLVPSTRDTGTKDETEETQKNMNKNLKQKHNIVISSCYVDSEYSDSEYCPQLATPKKDSADEKTESKKRGRKPSTGTTQTPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKAKIKDLESEKKRESKKVKMETMDNQSTVTTSTVVDQKRHCNSVIALEIDVKIIGNDAMVKVQSENVNHPGARLMSVFKDLKFQVHHASISCVNDVMLQDVFVVQLPKEMRNERSLKSAILKRLDDQE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00943 470 MobiDBLite consensus disorder prediction 270 286 - -
Trre16g00943 470 Gene3D - 284 370 IPR036638 GO:0046983
Trre16g00943 470 MobiDBLite consensus disorder prediction 63 83 - -
Trre16g00943 470 PANTHER MYC 16 465 IPR045084 GO:0003700|GO:0006355
Trre16g00943 470 MobiDBLite consensus disorder prediction 223 238 - -
Trre16g00943 470 Pfam Helix-loop-helix DNA-binding domain 297 342 IPR011598 GO:0046983
Trre16g00943 470 SMART finulus 299 348 IPR011598 GO:0046983
Trre16g00943 470 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Trre16g00943 470 MobiDBLite consensus disorder prediction 263 303 - -
Trre16g00943 470 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 22 180 IPR025610 -
Trre16g00943 470 MobiDBLite consensus disorder prediction 213 240 - -
Trre16g00943 470 CDD bHLH_AtAIB_like 295 355 - -
Trre16g00943 470 Coils Coil 332 366 - -
Trre16g00943 470 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 357 IPR036638 GO:0046983
Trre16g00943 470 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00943 Trre-Chr16 7341556 7342968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00943 13 441 EF-hand Containing Proteins AT5G46830 32.720 7.19e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g00943 bHLH-MYC_N 1.8e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00943 - K13422 gmx:100804965 473.396