Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00933 ATGATGAACAATAAAGTACCACCGAGACCTCGTACTAGAGTTGGGAAGTACGAATTAGGAAAAACAATTGGTGAAGGAAGTTTTGCGAAAGTTAAGTTAGCAAAGAATGTTGAAAGTGGTGATTATGTTGCTCTTAAAATTCTTGATCGTAATCATGTGCTTCGTCATAATATGATGGATCAGCTAAAGAGAGAAATTTCAGCTATGAAGATAATTAATCATCCAAACGTTGTTAAAATATTTGAGGTAATGGCAAGCAAAACAAAGATTTACATTGTCTTGGAGTTGGTTAGTGGAGGAGAATTATTTGACAAAATTGCTACAAATGGGAGACTTAAAGAGGATGAAGCAAGAAGTTATTTCCAACAACTAATCAATGCAGTTGATTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCGGAGAATCTTCTTTTGGACGTAAATGGTGTTCTTAAAGTTTCGGATTTTGGATTAAGTACATACTCACAGCAGGAGGATGAACTTCTCCGCACGGCATGCGGAACACCGAATTATGTTGCTCCCGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTACATCTGATATTTGGTCTTGTGGAGTCATTCTCTTTGTACTTATGGCTGGCTACTTGCCGTTCGACGAGCCGACTACAATTGCACTTTATCGGAAAATTGGTAGGGCTGAGTTCACATGTCCACCTTGGTTTTCGCCTGAGGCAAAGAAACTGCTCAAGGCCATACTTAACCCGAACCCTCTCACGAGGGTAAAAATTCCGGAAATCTTGGAAGATGAATGGTTCAAAAAAGGATACAAGCCGGCATGTTTTACCGAGGGTGACAATATTAATGTAGATGATGTTACTGCTGCTTTCAATGATTCTAAGGAAAATCTCGTGACAGAGACGAAAGAGAAACCTGTGTCGATGAATGCTTTTGAACTTATTTCTAGATCACAAAGCTTCAATCTTGACAATTTGTTTGAGAAGCAAAAGGGAGTTGTAAAGCGCGAAACACATTTCGCTTCACAGTGCCCTGCTAATGAAATTATGTCTAAGATTGAGGAGGCTGCCAAACCTCTCGGATTTAACGTTCACAAGCGAAATTACAAGATGAAGTTGCAAGGTGATAAAAGTGGTAGAAAGGGTCACCTTTCAGTGGCTACTGAGGTATTCGAAGTGGCTCCCTCCTTGCATATGGTGGAGCTGCGAAAGACGGGCGGCGACACACTAGAGTTTCACAAGTTCTACAAAACATTTTCATCAGGGTTGCAAGACATAGTGTGGCAATCTGACAAAAAATAG 1311 0.4043 MMNNKVPPRPRTRVGKYELGKTIGEGSFAKVKLAKNVESGDYVALKILDRNHVLRHNMMDQLKREISAMKIINHPNVVKIFEVMASKTKIYIVLELVSGGELFDKIATNGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDVNGVLKVSDFGLSTYSQQEDELLRTACGTPNYVAPEVLNDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPTTIALYRKIGRAEFTCPPWFSPEAKKLLKAILNPNPLTRVKIPEILEDEWFKKGYKPACFTEGDNINVDDVTAAFNDSKENLVTETKEKPVSMNAFELISRSQSFNLDNLFEKQKGVVKRETHFASQCPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKTFSSGLQDIVWQSDKK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00933 436 SMART serkin_6 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00933 436 Pfam NAF domain 309 369 IPR004041 GO:0007165
Trre16g00933 436 ProSiteProfiles Protein kinase domain profile. 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00933 436 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00933 436 CDD CIPK_C 313 426 - -
Trre16g00933 436 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Trre16g00933 436 Gene3D Kinase associated domain 1, KA1 306 432 - -
Trre16g00933 436 SUPERFAMILY Protein kinase-like (PK-like) 14 283 IPR011009 -
Trre16g00933 436 Gene3D Transferase(Phosphotransferase) domain 1 97 295 - -
Trre16g00933 436 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Trre16g00933 436 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Trre16g00933 436 Gene3D Phosphorylase Kinase; domain 1 8 96 - -
Trre16g00933 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Trre16g00933 436 FunFam Non-specific serine/threonine protein kinase 10 310 - -
Trre16g00933 436 FunFam Non-specific serine/threonine protein kinase 306 432 - -
Trre16g00933 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00933 Trre-Chr16 7290529 7294403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00933 5 434 CBL-interacting serine-threonine protein kinases AT1G01140 74.142 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre16g00933 Pkinase 8.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00933 - - gmx:100794136 773.467