Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00932 ATGATGAACAATAAGGTTTCACGGAGGCAACGTACTAGAGTTGGAAAATATGAAATGGGAAAAACAATTGGTGAAGGAAGTTTTGCAAAGGTGAAGTTGGCAAAAAATGTTGAAAATGGAAATTATGTTGCCATGAAAATTCTTGATCGTAATCATGTTCTACGCCATAATATGATGGAACAGCTGAGTAGAGAAATTTCAACTATGAAGATGATTAATCATCCAAACGTTGTCAAAATATATGAGGTAATGGCAAGCAAAACAAAGATTTACATTGTCTTGGAGTTAGTTAAAGGAGGAGAACTATTTGACAAAATTGCTAAGAATGGGAGACTTAAAGAGGATGAAGCAAGAAGTTATTTCCATCAACTAATCAATGCAGTTGATTACTGTCATAGTAGAGGAGTGTATCACAGAGATTTGAAGCCAGAAAATCTTCTTTTGGACAATAATGGTGTTCTTAAAATTACAGATTTTGGATTAAGTACATACTCACAGCAGGAGGATGAACTTCTCCGCACGGCATGCGGAACACCGAATTACGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTGCATCTGATATATGGTCTTGTGGAGTCATTCTCTTTGTACTTATGGCTGGCTATTTGCCGTTCGACGAGCCGAATCAAATGACACTTTTTAGGAAAATTGGTAGGGCTGAGTTCACATTTCCGCCTTGGTTTTCTGCCGAGGCAAAGAAGCTACTCAAGGCTATACTTAACCCGAACCCTCTAACAAGGATAAAAATTTCGGAAATCTTAGAAGATGAATGGTTCAAAAAAGGATACAAGCCGGCTACTTTTACGGAGGAAGATGATGTCAATGTAGATGATGTCGCTGCAGCCTTCAATGATTCTAAGGAAAATCTCGTGAGCGAGACTAAAGAGAAACCCGTATCGATGAATGCTTTTGAGCTTATTTCTAGATCACAAAGCTTCAATCTTGACAATATGTTTGAGATGGAGCAAAAGGGGATTGTAAAGCGCGAAACACATTTCGCTTCACAATGCCCTGCAAATGAAATTATGTCTAAAATTGAGGAGGCTGCCAAACCTCTCGGATTTAACGTTCACAAGCGAGATTACAAGATGAAATTGCAAGGTGATAAAAGTGGAAGGAAGGGTCACCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCTCCCTCCTTGCATATGGTGGAGCTACGAAAGACGGGCGGCGACACACTAGAGTTTCACAAGTTCTACAAATCATTTTCATCAGGGTTGCAAGACATAGTGTGGCACACTGACGGTGTCAAAGAATAA 1320 0.3962 MMNNKVSRRQRTRVGKYEMGKTIGEGSFAKVKLAKNVENGNYVAMKILDRNHVLRHNMMEQLSREISTMKMINHPNVVKIYEVMASKTKIYIVLELVKGGELFDKIAKNGRLKEDEARSYFHQLINAVDYCHSRGVYHRDLKPENLLLDNNGVLKITDFGLSTYSQQEDELLRTACGTPNYVAPEVLNDRGYVGSASDIWSCGVILFVLMAGYLPFDEPNQMTLFRKIGRAEFTFPPWFSAEAKKLLKAILNPNPLTRIKISEILEDEWFKKGYKPATFTEEDDVNVDDVAAAFNDSKENLVSETKEKPVSMNAFELISRSQSFNLDNMFEMEQKGIVKRETHFASQCPANEIMSKIEEAAKPLGFNVHKRDYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFSSGLQDIVWHTDGVKE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00932 439 FunFam Non-specific serine/threonine protein kinase 10 310 - -
Trre16g00932 439 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Trre16g00932 439 ProSiteProfiles Protein kinase domain profile. 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00932 439 Gene3D Kinase associated domain 1, KA1 306 433 - -
Trre16g00932 439 SMART serkin_6 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00932 439 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00932 439 Pfam NAF domain 309 370 IPR004041 GO:0007165
Trre16g00932 439 SUPERFAMILY Protein kinase-like (PK-like) 14 302 IPR011009 -
Trre16g00932 439 Gene3D Transferase(Phosphotransferase) domain 1 97 298 - -
Trre16g00932 439 CDD CIPK_C 313 427 - -
Trre16g00932 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 418 - -
Trre16g00932 439 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Trre16g00932 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Trre16g00932 439 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Trre16g00932 439 Gene3D Phosphorylase Kinase; domain 1 6 96 - -
Trre16g00932 439 FunFam Non-specific serine/threonine protein kinase 306 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00932 Trre-Chr16 7274433 7281008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00932 5 439 CBL-interacting serine-threonine protein kinases AT1G01140 72.851 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre16g00932 Pkinase 5.3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00932 - - gmx:100794136 762.681