Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00928 ATGACAATTATGATAGGAATTGGAAGAGGAATTCAATACTTACATAGAGGAGTTAATAATGGCATATTTGGAAACAACTTAAAGATTGAGAACATTCTATTAGACAATAATCTCAATCCAAAAGTTAGTGGATATAGCATTCCATTTCCATCCAAGAAAGGTTCTGAAAAAAAACTTAAAGAACAAAATTCACACAATCATATTGGCAGCATCAATACTGCAGAAAAGGAAGACATATATCAATTTGGTGTGATTCTACTTGAAGTTATAACTGGGAAACTAATTACATCTTCTATTGAAGTAGAAGTTTTGAAATATGAGGTACATTACATATCTTAA 339 0.2979 MTIMIGIGRGIQYLHRGVNNGIFGNNLKIENILLDNNLNPKVSGYSIPFPSKKGSEKKLKEQNSHNHIGSINTAEKEDIYQFGVILLEVITGKLITSSIEVEVLKYEVHYIS 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00928 112 Gene3D Transferase(Phosphotransferase) domain 1 1 110 - -
Trre16g00928 112 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00928 112 SUPERFAMILY Protein kinase-like (PK-like) 2 101 IPR011009 -
Trre16g00928 112 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00928 Trre-Chr16 7258500 7259142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00928 1 112 Miscellaneous Gene Families AT2G02780 53.982 6.72e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre16g00928 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00928 - - mtr:11414733 188.348